Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00800 ATGGCGGAAGCGTCTGAGAAAGCTGAATTTCAGGAATCCGCCGCCGCAAAGATCCGGCAAATCACCGCCGAGTTGGCTACCACCACTGCCGGACGGATCCATGAATTGTACGGTCAATTAGCGAAGGGCCAAAGCCCGAAGTCTCTGGTATTTGCGTGCTCGGATTCCCGAGTTTACCCCTCACATATACTGAATTTTCAACCTGGGGAGGCCTTTGTGGTCCGTAACATCGCCAACATGGTCCCACCATTTGACAAGCTTTGGGGAATTATATTTATGGATCTTCTCCAGTCGTACACAGATCAAAACGACGATGACGGAAGCCCTAAACAGCTTACATCTTCACCGGAAGCCTCTCCGCCGCGGCTCCTCCCCTCCAAAACCTCGGCGCCCAAGGTTGATGATACAATGTTGGCTCTTACGGTGGCCAACGCCAACAGGACATTATCTAAGCCGATAGACCCAACTCAACATCTAGTTGCCTTCAACCCTACCTACGACCAGCTCTGGGCGCCCATTCTTGGACCATCTCATCCCTATGCGAAGGATGGCATTGCACAGGGCATGAGAAACCATAAGCTAGGCTTTGTTGAGGATGCGTCCATTGAGCCATTTGTATTTGATGAGCAGTACAACACTTTCCACAAATATGGATATGCTGCTGACCCTTCAGCTTCTGCTGGAAACAATTTCATTGGGGATATGGAGGCTTTGCAGAAGAATGATGCCATATCCGTGTATAACATCCCACAGCATGAGCAAAAGAAGCGGAAGATTGAGAAGAAGAAAGAAATGAGTGAGAGTGAGGATGTGGAAATGGATTTGAACCCGGCTGAAGTTGATAATCCGGCGAGTGATGTGTGGTTGATGAAGAATAGGAAGAGCCCTTGGTCTGGGAAGAAGGAAGGTCTGCAAACTGAGCTAACTGAGGAGCAGAAGAAATACGCAGAAGAGTATGCAAAGAAGAAAGGTGAAGAGAAAGGTGGTGAGAAGGGAGAAGTTACAGCAGATAAGAGTACTTTTCATGGTAAAGAGGAGAGGGACTATCAGGGTAGATCTTGGATTGCTCCACCGAAGGACGCCAAGGCCACGAATGATCATTGTTATATACCAAAAAGATTGGTGCATACATGGAGCGGGCACACAAAGGGTGTATCTGCTATTAGATTCTTCCCTAAACATGGTCATTTGATTCTTTCAGCGGGTATGGATACCAAGGTGAAGATATGGGATGTGTTCAATTCTGGGAAATGTATGAGAACCTACATGGGTCACTCTCAGGCGGTTCGGGATATTTCGTTTTGTAACGATGGGTCCAAGTTTTTGACTGCTGGGTATGATAAAAAGATTAAGTATTGGGATACAGAAACAGGGCAAGTGATATCAACCTTCTCCACCGGGAAAATTCCTTATGTAGTTAAGCTCAATCCTGATGATGATAAGCAGAATATTTTGCTGGCAGGGATGAGTGATAAGAAGATCGTTCAGTGGGATATGAACACAGGGCAGATTACTCAAGAGTACGATCAACATTTAGGAGCAGTGAATACCATTACATTTGTAGACAATAATAGGAGGTTTGTCACGTCAAGTGACGACAAGTCGCTCCGTGTTTGGGAATATGGGATTCCTGTTGTTATTAAGTATATTAGTGAGCCTCATATGCATTCCATGCCCTCCATATCGGTACACCCCAATACAAATTGGCTTGCAGCACAGAGTTTAGACAATCAAATTCTTATCTATAGCACTAGGGAGAGATTTCAGCTAAACAAGAAAAAGAGGTTTGCTGGTCACATTGTGGCAGGATACGCTTGTCAGGTCAATTTTTCACCAGACGGACGCTTTGTTATGTCTGGTGATGGTGAGGGTAAATGCTGGTTTTGGGACTGGAAAACCTGCAAGGTATTCAGAACTCTCAAGTGTCACGAAGGAGTATGCATTGGCTGTGAGTGGCATCCATTAGAACAGAGTAAAGTAGCAACGTGTGGCTGGGATGGACTGATAAAGTATTGGTAA 2019 45.72 MAEASEKAEFQESAAAKIRQITAELATTTAGRIHELYGQLAKGQSPKSLVFACSDSRVYPSHILNFQPGEAFVVRNIANMVPPFDKLWGIIFMDLLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANRTLSKPIDPTQHLVAFNPTYDQLWAPILGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYNTFHKYGYAADPSASAGNNFIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSESEDVEMDLNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7030407 7036753 + CmaCh18G008000.1 Cma18g00800 314138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00800 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 412 - -
Cma18g00800 672 Gene3D - 358 672 IPR015943 GO:0005515
Cma18g00800 672 MobiDBLite consensus disorder prediction 255 270 - -
Cma18g00800 672 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 53 60 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cma18g00800 672 MobiDBLite consensus disorder prediction 255 279 - -
Cma18g00800 672 SMART Pro_CA_2 41 274 IPR001765 GO:0004089|GO:0008270
Cma18g00800 672 SUPERFAMILY WD40 repeat-like 369 672 IPR036322 GO:0005515
Cma18g00800 672 Gene3D Carbonic anhydrase 4 92 IPR036874 GO:0004089|GO:0008270
Cma18g00800 672 PRINTS G protein beta WD-40 repeat signature 441 455 IPR020472 -
Cma18g00800 672 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Cma18g00800 672 PRINTS G protein beta WD-40 repeat signature 527 541 IPR020472 -
Cma18g00800 672 Coils Coil 249 269 - -
Cma18g00800 672 Pfam Carbonic anhydrase 49 85 IPR001765 GO:0004089|GO:0008270
Cma18g00800 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 412 IPR001680 GO:0005515
Cma18g00800 672 PANTHER PRE-MRNA-PROCESSING FACTOR 17 133 672 IPR032847 GO:0000398|GO:0071013
Cma18g00800 672 MobiDBLite consensus disorder prediction 321 349 - -
Cma18g00800 672 ProSitePatterns Trp-Asp (WD) repeats signature. 398 412 IPR019775 -
Cma18g00800 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 463 IPR001680 GO:0005515
Cma18g00800 672 Pfam WD domain, G-beta repeat 595 630 IPR001680 GO:0005515
Cma18g00800 672 Pfam WD domain, G-beta repeat 502 539 IPR001680 GO:0005515
Cma18g00800 672 Pfam WD domain, G-beta repeat 373 411 IPR001680 GO:0005515
Cma18g00800 672 Pfam WD domain, G-beta repeat 416 454 IPR001680 GO:0005515
Cma18g00800 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 540 IPR001680 GO:0005515
Cma18g00800 672 MobiDBLite consensus disorder prediction 102 122 - -
Cma18g00800 672 MobiDBLite consensus disorder prediction 102 130 - -
Cma18g00800 672 Coils Coil 301 321 - -
Cma18g00800 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 459 - -
Cma18g00800 672 SUPERFAMILY beta-carbonic anhydrase, cab 24 85 IPR036874 GO:0004089|GO:0008270
Cma18g00800 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 508 540 - -
Cma18g00800 672 CDD WD40 374 672 - -
Cma18g00800 672 SMART WD40_4 371 411 IPR001680 GO:0005515
Cma18g00800 672 SMART WD40_4 501 540 IPR001680 GO:0005515
Cma18g00800 672 SMART WD40_4 544 583 IPR001680 GO:0005515
Cma18g00800 672 SMART WD40_4 589 630 IPR001680 GO:0005515
Cma18g00800 672 SMART WD40_4 415 454 IPR001680 GO:0005515
Cma18g00800 672 SMART WD40_4 633 672 IPR001680 GO:0005515
Cma18g00800 672 SMART WD40_4 457 498 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00800 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 1136.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01731 Cma18g00800 CCT
Cma04g01731 Cma18g00800 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00275 Cma-Chr16:1280072 Cma18g00800 Cma-Chr18:7030407 1.97E-15 dispersed
Cma18g00800 Cma-Chr18:7030407 Cma03g00866 Cma-Chr3:6430815 2.69E-29 dispersed
Cma04g00928 Cma-Chr4:4786601 Cma18g00800 Cma-Chr18:7030407 6.56E-50 transposed
Cma11g01430 Cma-Chr11:9421355 Cma18g00800 Cma-Chr18:7030407 4.18E-26 wgd
Cma14g00650 Cma-Chr14:3241654 Cma18g00800 Cma-Chr18:7030407 1.23E-26 wgd
Cma18g00800 Cma-Chr18:7030407 Cma04g01729 Cma-Chr4:8696133 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g705 . . Bda01g02222 Bda11g01265 Bpe13g00496 . . . . Cmo18g00804 . Cma18g00800 . Car18g00731 Sed08g1391 Cpe09g00503 Cpe01g01530 Bhi07g01727 Tan04g1231 Cmetu04g2853 Lac13g0202 Hepe10g1642 . . Cla05g02540 Cam05g2730 Cec05g2761 Cco05g2801 Clacu05g2731 Cmu05g2584 Cre05g2698 Cone13ag1039 Cone19ag1029 Cone8ag0661 Cone12ag0642 Lsi04g00548 Csa05g02338 Chy10g00905 Cme10g00521 . . . Bda11g01265 . . Bma01g00049 Bma06g00622 . . . Cma04g01731 . Car04g01764 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00800 Cma_Chr18 FPKM 22.11788 23.837343 23.878975 24.231054 23.956268 24.054947 25.16362 25.548939 27.742554 26.599464