Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00806 ATGGCTACTTTAGCCGATTCTTTTCTAGCAGATCTTGATGAACTCTCTGATGAAGACAATTTTCCGGATGAGGAAGATGTTGATGCTGAAAATATGGAAGAGGATATTGATGGAGACCTTGCCGACCTAGAAAGCCTTAATTATGATGATCTTGATAATGTCTCAAAATTGCAGAAATCACAGAGATACAGTGATATAATGCAGAAAGTGGAAGATGCATTACAGAAGGATTCTAATATCTCAAATCAAGGATTAGTATTGGAAGATGATCCTGAGTACCAACTGATTGTGGAGTGTAATGCTTTGTCGGTGGATATTGAGAATGAAATTATTATTATTCACAATTTTATACGTGATAAATATCGATTGAAATTTCCAGAGCTTGAATCACTTGTGCACCACCCAATCGATTATGCTCGAGTTGTTAAGAAGATTGGCAATGAAATGGATTTGACTCTTGTAGACTTAGAAGGGCTTTTACCCTCTGCTGTCATTATGGTTGTCTCAGTTACAGCATCTACCACAAGTGGCAAGCCACTTCCAGAGGAAATTCTCCAGAAAACAATTGATGCATGTGACCGGGCTCTTGCTTTAGATTCAGCAAAGAAAATGGTTCTTAACTTTGTTGAAAGTAGAATGGGGTATATTGCACCAAATCTTTCAGCCATAGTTGGAAGTGCTGTTGCAGCAAAACTAATGGGAACTGCTGGTGGGCTTGCTTCTTTAGCTAAGATGCCTGCTTGCAATGTCCAGCTTCTTGGTGCGAAGAAAAAGAACCTTGCTGGGTTTTCCACAGCAACTTCACAGTTTCGGTTAGGTTACATTGAGCAAACAGAGATATTCCAATCAACACCTCCCCATTTGAAGATGCGTGCTTGTCGACTTGTATCTGCAAAATCAACACTTGCAGCACGAGTTGACTCCACCAGGGGCGATCCTACTGGGAAGACTGGAAGAGTTTTTAAAGATGAGATCCTTAAGAAAATTGAGAAGTGGCAAGAACCTCCACCAGCTAAACAACCAAAACCTCTTCCGGTCCCTGATTCTGAACCCAAAAAGAAGAGAGGTGGCCGTCGACTAAGGAAGATGAAGGAAAGATATGCAACAACAGAGATGAGGAAGCTAGCCAACAGGATGCAGTTTGGGGTGCCTGAAGAGAGTTCTTTAGGAGATGGATTAGGGGAAGGGTATGGAATGCTTGGTCAGGCTGGGAGTGGCAAGCTGCGTGTGTCAGCTGCTCAGAGCAAGCTTGCCGCAAAAGTTGTTAAGAAGTTCAAGGAAAAACGTTATGGAAGCAGTGGTGCTACGTCTGGCCTGACGTCCAGTTTAGCATTTACACCTGTACAAGGGATTGAGCTGTCGAATCCTCAGGCTCATATGAATCAACTAGGCAGTGGAACTCAAAGCACCTACTTTTCTGAAACGGGAACATTTTCAAAAATCAGGAAAAACTAA 1455 42.27 MATLADSFLADLDELSDEDNFPDEEDVDAENMEEDIDGDLADLESLNYDDLDNVSKLQKSQRYSDIMQKVEDALQKDSNISNQGLVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALALDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKMPACNVQLLGAKKKNLAGFSTATSQFRLGYIEQTEIFQSTPPHLKMRACRLVSAKSTLAARVDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKFKEKRYGSSGATSGLTSSLAFTPVQGIELSNPQAHMNQLGSGTQSTYFSETGTFSKIRKN 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7062094 7065635 - CmaCh18G008060.1 Cma18g00806 314144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00806 484 MobiDBLite consensus disorder prediction 456 478 - -
Cma18g00806 484 Pfam Prp31 C terminal domain 339 456 IPR019175 -
Cma18g00806 484 ProSiteProfiles Nop domain profile. 216 334 IPR002687 -
Cma18g00806 484 SUPERFAMILY Nop domain 88 334 IPR036070 -
Cma18g00806 484 MobiDBLite consensus disorder prediction 11 36 - -
Cma18g00806 484 Gene3D Nop domain 217 342 IPR042239 -
Cma18g00806 484 MobiDBLite consensus disorder prediction 330 361 - -
Cma18g00806 484 Gene3D - 77 216 - -
Cma18g00806 484 MobiDBLite consensus disorder prediction 456 484 - -
Cma18g00806 484 SMART NOSIC_2 95 147 IPR012976 -
Cma18g00806 484 MobiDBLite consensus disorder prediction 1 36 - -
Cma18g00806 484 PANTHER U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 1 481 - -
Cma18g00806 484 PANTHER PRE-MRNA SPLICING FACTOR PRP31 1 481 IPR027105 GO:0000244|GO:0000398|GO:0046540
Cma18g00806 484 Pfam snoRNA binding domain, fibrillarin 103 331 IPR002687 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00806 K12844 PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31 - csv:101210892 848.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01721 Cma18g00806 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01101 Cma-Chr12:8716865 Cma18g00806 Cma-Chr18:7062094 5.53E-27 dispersed
Cma18g00806 Cma-Chr18:7062094 Cma04g01721 Cma-Chr4:8656339 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g739 . . . . . . Bma14g01786 . . . . Cma18g00806 . Car18g00738 . Cpe09g00498 Cpe01g01522 . . . . . . . Cla05g02530 Cam05g2720 Cec05g2751 Cco05g2792 Clacu05g2722 Cmu05g2576 Cre05g2690 . . . . Lsi04g00536 Csa05g02346 Chy10g00914 Cme10g00513 . Blo11g00906 Bda07g01595 . . . . . . . . Cma04g01721 . Car04g01752 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006442 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00806 Cma_Chr18 FPKM 1.642899 2.330737 7.73158 7.373814 11.674076 9.66554 11.910823 14.557216 14.342015 14.681537