Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00807 ATGGCGGCGGCGGCGGTGGCGAAGAAACAGGAAAATGGGGTCTCCGCCTCAGAGTCCGATGGTATTTCCTCTGTGATTCCTGGATGGTTTTCTGAAATCAGCCAAATGTGGCCGGGAGAGGCGCACTCCTTGAAGGTGGAAAAGATTCTGTTCCAAGGGAAATCTGATTACCAGAATGTTATGGTTTTTCAGTCATCAACTTATGGGAAGGTTCTGGTCTTGGATGGAGTGATTCAGTTAACAGAGAGAGATGAATGTGCTTACCAAGAGATGATCACTCACCTTCCACTTTGCTCAATTCCAAACCCCAAAAAGGTTCTAGTTATCGGTGGAGGAGATGGCGGTGTCTTGCGAGAGGTAGCTCGCCATTCATCTGTTGAGAAGATAGATATCTGTGAAATCGACAAGATGGTAGTTGACGTTTCCAAAGAATTTTTCCCTCGCGTAGCTATTGGGTTCGAGGATCCTCGTGTCACACTTCACGTCGGTGATGGCGTTGCATTTCTAAAGGCTGTTCCTGAAGGCACTTATGATGCTGTTATAGTGGACTCATCTGATCCTATTGGTCCTGCACAAGAGCTTTTTGAGAAGCCTTTTTTTGCTTCGGTCGCCAAAGCTCTTCGACCGGGAGGTGTCGTGTGTACTCAAGCAGAGAGCATTTGGCTTCACATGAAAATCATTGAAGACATTGTTACAAACTGCCGCCAAGTATTCAAGGGCTCTGTTAACTACGCTTGGACTACAGTTCCTACATATCCAAGCGGAGTGATCGGGTTTATGCTCTGCTCGACCGAGGGACCTCCTGTTGATTTCAAGCATCCAGTCAACCCAGTAGAGGTGAACGGCATCGATACCCCAAACAATTCGCTTAAGTTTTACAACTCCGAGATTCATTCAGCAGCTTTCTGCTTGCCTTCTTTTGCAAAGAAGATCATCGATTCAAAATCTAATTGA 954 46.33 MAAAAVAKKQENGVSASESDGISSVIPGWFSEISQMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEFFPRVAIGFEDPRVTLHVGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMKIIEDIVTNCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPVEVNGIDTPNNSLKFYNSEIHSAAFCLPSFAKKIIDSKSN 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7069542 7072729 + CmaCh18G008070.1 Cma18g00807 314145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00807 317 TIGRFAM speE: spermidine synthase 29 307 IPR001045 GO:0003824
Cma18g00807 317 PANTHER SPERMIDINE/SPERMINE SYNTHASE 11 317 IPR001045 GO:0003824
Cma18g00807 317 Hamap Polyamine aminopropyltransferase [speE]. 28 313 IPR001045 GO:0003824
Cma18g00807 317 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 25 313 IPR029063 -
Cma18g00807 317 Pfam Spermidine synthase tetramerisation domain 28 82 IPR035246 -
Cma18g00807 317 Gene3D Spermidine synthase, tetramerisation domain 21 79 IPR037163 -
Cma18g00807 317 PANTHER SPERMIDINE SYNTHASE-RELATED 11 317 - -
Cma18g00807 317 Gene3D Vaccinia Virus protein VP39 80 317 IPR029063 -
Cma18g00807 317 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 106 119 IPR030373 -
Cma18g00807 317 CDD AdoMet_MTases 105 216 - -
Cma18g00807 317 Pfam Spermine/spermidine synthase domain 85 272 - -
Cma18g00807 317 PIRSF Spermidine_synth 17 317 IPR030668 GO:0006595
Cma18g00807 317 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 27 264 IPR030374 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00807 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 563.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01719 Cma18g00807 CCT
Cma04g01719 Cma18g00807 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01110 Cma-Chr2:6595343 Cma18g00807 Cma-Chr18:7069542 2.71E-160 dispersed
Cma13g00898 Cma-Chr13:7223920 Cma18g00807 Cma-Chr18:7069542 2.27E-138 dispersed
Cma18g00807 Cma-Chr18:7069542 Cma18g01308 Cma-Chr18:10046705 2.17E-144 dispersed
Cma05g00414 Cma-Chr5:1850006 Cma18g00807 Cma-Chr18:7069542 1.13E-32 transposed
Cma05g01408 Cma-Chr5:10494787 Cma18g00807 Cma-Chr18:7069542 3.77E-33 transposed
Cma06g01416 Cma-Chr6:9119732 Cma18g00807 Cma-Chr18:7069542 9.10E-40 transposed
Cma10g00133 Cma-Chr10:605951 Cma18g00807 Cma-Chr18:7069542 3.85E-150 wgd
Cma12g00002 Cma-Chr12:6511 Cma18g00807 Cma-Chr18:7069542 1.40E-23 wgd
Cma18g00807 Cma-Chr18:7069542 Cma04g01719 Cma-Chr4:8650792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00807 Cma_Chr18 FPKM 131.449066 130.347748 184.008499 193.184372 108.990997 109.125221 111.707222 588.385315 564.73584 599.598145