Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00809 ATGTTCGATTGGCGAAGACAAAGCTCGCCTAAGGCTAGTCGTGAGCGTGTATGGATCACAACGCCGCACGGTCAAGAAGGTAGGACCGTCACACTCTGCGACTACAGGCAACGCCGTTTTCCTACATTATCACCGGCTGATCTGTGTGATTTGTTTTCTTTGTGTAGAATGTTTTCCTGGGATTGCTTACTCGTACTATTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATAGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGTGGTGGTGGTGGTGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCTCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGAGTAATAGTCCTCGTGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGTTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCGTGCCTCACCTTATGCTAACGGAGATTGATCCCGGAATCGAGGCTGATGCTGTGCTTGTAGAAATTAGATGA 729 49.25 MFDWRRQSSPKASRERVWITTPHGQEGRTVTLCDYRQRRFPTLSPADLCDLFSLCRMFSWDCLLVLFSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSKGGGGGGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRAAGVQVMKDMVAGVIVLVVKDLHDVAALHLLSVVGVTADLLHSVMLAVPHLMLTEIDPGIEADAVLVEIR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7074572 7077581 - CmaCh18G008090.1 Cma18g00809 314147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00809 242 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 68 177 - -
Cma18g00809 242 SUPERFAMILY Retrovirus zinc finger-like domains 124 157 IPR036875 GO:0003676|GO:0008270
Cma18g00809 242 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 68 177 - -
Cma18g00809 242 CDD RRM_SRSF3_like 68 125 - -
Cma18g00809 242 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Cma18g00809 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 115 IPR000504 GO:0003723
Cma18g00809 242 SMART rrm1_1 62 123 IPR000504 GO:0003723
Cma18g00809 242 ProSiteProfiles Zinc finger CCHC-type profile. 138 154 IPR001878 GO:0003676|GO:0008270
Cma18g00809 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 127 IPR000504 GO:0003723
Cma18g00809 242 SUPERFAMILY RNA-binding domain, RBD 68 117 IPR035979 GO:0003676
Cma18g00809 242 Pfam Zinc knuckle 138 153 IPR001878 GO:0003676|GO:0008270
Cma18g00809 242 Gene3D - 134 172 - -
Cma18g00809 242 Gene3D - 60 123 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00809 K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7 - mnt:21410410 178.333
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01717 Cma18g00809 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00533 Cma-Chr9:2376770 Cma18g00809 Cma-Chr18:7074572 1.19E-40 dispersed
Cma18g00809 Cma-Chr18:7074572 Cma04g00252 Cma-Chr4:1228667 4.67E-07 dispersed
Cma18g00809 Cma-Chr18:7074572 Cma04g01717 Cma-Chr4:8643578 1.56E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g741 . . . . . Bpe10g00832 . Bma15g00192 . Cmo18g00811 . Cma18g00809 . Car18g00740 . Cpe09g00496 Cpe01g01520 . . . . . . . Cla05g02528 Cam05g2718 Cec05g2749 Cco05g2790 Clacu05g2720 Cmu05g2574 Cre05g2688 Cone13ag1031 Cone19ag1022 . . Lsi04g00534 Csa05g02349 Chy10g00916 Cme10g00510 Blo06g00870 . . . . . . . . . . Cma04g01717 . Car04g01749 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00809 Cma_Chr18 FPKM 2.653484 2.472931 3.247477 4.484659 6.237255 7.741457 5.366433 2.827963 3.183124 2.839875