Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00810 ATGTCAAATTCTGAAACTGCCGACAGCTCTAATGGCGCCGCCATCGACACCCACAAAAACCAGCCCTCTTCCAACGGAGCCCTCGCCGTTAAAAAGCCCCCTTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGTCGCATCCGTATGCCCATAATCTGCGCCGCTCGTGTCTTCCAGCTGACTCGTGAACTTGGTCATAAATCCGATGGCCAAACCATCGAGTGGCTCCTCCGTCAAGCAGAGCCTTCTATTATTGCTGCCACCGGCACCGGCACCACTCCCGCCAATTTCTCTTCCATTTCTCTCTCCGTCAGAGGAAATGGCAGCTCCGCCTCTCTCTCTTCCACTACTTCCACTCTCTCCCTCTCTCGTCCCCAGCCGTTCTTTCTTGGCAAACGTGTGAGAGCCGACGACGACGGCGGTACTGACGATGGGTTGGGAGTGGGTCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGGCAGGTGTGGAGTTTCGCGGCTGCCGCCGCCGCGGAACAGGGGATTTCTCAGCCGGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCAGCGAGAGTTGGGAATTACCTTCCGGGTCATCTGAATTTACTGGCGTCCTTGTCCGGTGGCGGCGGTGCCGGCCGGCGGGAAGACGATCGTCGTTGA 693 59.31 MSNSETADSSNGAAIDTHKNQPSSNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSISLSVRGNGSSASLSSTTSTLSLSRPQPFFLGKRVRADDDGGTDDGLGVGPSGYWAIPARPDYGQVWSFAAAAAAEQGISQPASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGAGRREDDRR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7082679 7083371 + CmaCh18G008100.1 Cma18g00810 314148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00810 230 MobiDBLite consensus disorder prediction 32 47 - -
Cma18g00810 230 Pfam TCP family transcription factor 35 123 IPR017887 -
Cma18g00810 230 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 226 IPR005333 GO:0003700
Cma18g00810 230 MobiDBLite consensus disorder prediction 1 47 - -
Cma18g00810 230 ProSiteProfiles TCP domain profile. 35 89 IPR017887 -
Cma18g00810 230 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 226 - -
Cma18g00810 230 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02246 Cma-Chr4:15663375 Cma18g00810 Cma-Chr18:7082679 5.52E-77 dispersed
Cma15g00788 Cma-Chr15:3930481 Cma18g00810 Cma-Chr18:7082679 6.24E-82 dispersed
Cma18g00810 Cma-Chr18:7082679 Cma18g01160 Cma-Chr18:9296551 1.10E-39 dispersed
Cma18g00810 Cma-Chr18:7082679 Cma04g01259 Cma-Chr4:6439273 3.96E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36791 PF03634 TCP 7.50E-34 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00810 K16221 - csv:101206050 317.005