Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00811 ATGTCTCGGAAATCCCAGGGGATGATTTCATTACAATCCATTAAATCCATGCCAGCTAATTCTCGGTTCATGATTCCGCAAGAAGCTGAAGCTTTGGAAGAGCCTTATAATCGGAATGTGAAAAACATGGAAGCTAGTTCGTTAGTTGATGGCGAAAATGGTGCTTCTGGAGTTGATCGACTTCGATCCAGTACGAACAATAGTGACGTGCTGAATGAGGATTCACCGTATAATTTCAATATTAAAACAGTGGAAGAAAGACCCGCGCTGGAAGATGGAGAAGATGGTTCTATGTCTTTACCTTCACCTTCAAATTCGGCTTCACATAGTGAAAGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACATCAATCTTGGTTTAAACTTCCAAATGGCGATTGGGATCTTGTAAATATACTGTCAACTACAGGAACAGAATCAGTAGTTTCACTGACTGAAGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTAATTTCTGCAAATCCAGATATCCTTGATGGCGTTGATGATCTTATGCAACTTAGCTATCTAAATGAACCTTCAGTGTTGTATGATCTCGAGTACAGATATAATCAGGATCTTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGACTTGTATGGAAGTGATTACATTGAAGCATACAAGCGCAAAACGGCTCAGAGTCCGCATGTTTATGCCATTACAGATACAGCCATCAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTGTAATAAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCAGCCCTTGGCGGTGGAAGTGGAATAGAGTTTGAGATATTGAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACTTCGAGAAATGATAACTCAAGCCGCTTCGGAAAATTGATTGAAATCCATTTTAGTGAAACTGGGAGAATCACTGGTGCAAATATTCAAACTTATGGTTCATCTGACTTTGATTGTGCTGCTCATTATGAACCCCGGACAGTTTTGCTGGAAAAGTCGAGAGTTGTTCAATGCACGGAGGGAGAAAGGTCATACCACATCTTTTATCAACTTTGTAGTGGGGCTCCTCCCGAACTTAAAGAGAGGCTGAACTTGAGAAGAGCGGAAGAGTACAAGTATCTCAGCCAGAGCAATTGTTTTTCAATAAATAGAGTAAATGATGCTGAAGAGTTTCGTATTGTCACGGAAGCATTAAATGTCGTCCATATCAGCAAAGAAGATCAGCACAGCGTATTTGCAATGCTTGCTGCTGTGCTGTGGCTGGGAAATGTTTCCTTTAGCGTGATAGACAATGAGAATCATGTGGAAGTCGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGATATTGAGGAGCTTAAACTAGCTTTATCAACTCGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACTTTACCTCAGGCAATTGACACTCGAGATGCTTTGGCAAAGTCAATTTATGCTTGTTTGTTTGAGTGGTTGGTCGAACAAATTAACAAATCTCTTGCTGTAGGCAAAAGGCGAACTGGAAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTGGAACAATTCTGCATCAACTATGCAAATGAGAGGTTGCAGCAGCATTTCAATCGTCATTTATTTAAGCTCGAGCAGGAGGAATATATTCAAGATGGTATCGACTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTTTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGACGAGGAGTCTACTTTCCCGAATGCCACAGATATGACCTTTGCAAACAAGCTGAAGCAGCATTTGCGTCGTTCTTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTTACTGTCTGTCATTATGCAGGAGAGGTCACTTATGATACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCATCGTGCTCGTGCCATCTCCCTCAGGCTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATTGGTGGCACTTCACATAAGTCTGGTGGTGCAGAATCCCAAAAACTGAGTGTTGCCAGAAAGTTTAAGGATCAATTATTCCAATTGATACTCCGTCTTGAAAATACGACACCTCATTTCATCCGTTGCATCAAGCCTAACAAACTTCAGTCTCCTGGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAAATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGATTTCCTACTCGGATGTCGCATAAGAAATTTTCTCAAAGGTACGGTTTCCTTCTACAAGAAAGCCTTTCATCGCAGGATCCACTAAGCGTCTCGGTCGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTTCACGGAATTCTCTGTGTTCAAAGCTGTTTTAGAGGGCACCTGGCTCGATGCCACATCAAAGAGCTGAAAAAAGGGATTTCCACTCTTCAGTCATTTGTACGTGGGGAGAAAACCAGAAAAGAGTATGCTATCTTGTTACGAAGGCATAGGGCTGCTATTTCTATTCAGAAGTATCAGAAAGCCAGAATTGCTAGAAAACGTTCGAAGGAGGTTTGTGATGCATCAGTCGTGATACAATCAGTTATCCGTGGTTGGTTGGTAAGAGGATGCTCCGGAAATATAGGATTAATGAGTCCTGGTGGTCTTTCGGAAAATGGATCAGGGGATGTGCTTGTCAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCATGAAGGCCGAGGCTACTTTGAGAGATAAAGAAGAAGAAAACGACATCCTCCATCAACGCGTTCAACAGTATGAGAACCGATGGTCAGAGTATGAACTGAAAATGAAGTCAATGGAAGAGATGTGGCAGAGACAAATGAGATCCCTGCAATCTAGCCTCTCCATTGCAAAGAAAAGCTTATCAGTTGATGATTCAGATAGAAATTACGACGCGTCAGTCGATGCAAGCCACGAAAGAGGATACAGTTGGGAATTGGGTACCAACAACACAACTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGTGTCATTAGCCGATTAGCTGAAGAATTCGACCAACGAAGTCAAGTCTTCGGCGATGATGCAAAGTTCTTAGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTATCGACCCAGATAGGGAATTCAGAAGGTTGAAACAAATGTTTGATGCATGGAAGAAAGATTACGGTGGACGACTGCGAGAAACGAAAGTGATTTTAAACAAGATCGGGAATGGCGGTGCCATGGATAGAGTGAAAAGGAAATGGTGGGGAAGGAGGAACAGCACAAGGATATAG 3564 41.53 MSRKSQGMISLQSIKSMPANSRFMIPQEAEALEEPYNRNVKNMEASSLVDGENGASGVDRLRSSTNNSDVLNEDSPYNFNIKTVEERPALEDGEDGSMSLPSPSNSASHSESRWGDTSSYTPRKIHQSWFKLPNGDWDLVNILSTTGTESVVSLTEGKVLKVKAENLISANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDLIYTKAGPVLVAINPFKKVDLYGSDYIEAYKRKTAQSPHVYAITDTAIREMIRDEVNQSIVISGESGAGKTETAKIAMQYLAALGGGSGIEFEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGRITGANIQTYGSSDFDCAAHYEPRTVLLEKSRVVQCTEGERSYHIFYQLCSGAPPELKERLNLRRAEEYKYLSQSNCFSINRVNDAEEFRIVTEALNVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEVVEDEGLQTVAKLIECDIEELKLALSTRKMRVGNDSIVQKLTLPQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSLEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNATDMTFANKLKQHLRRSSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQAFASNMLTQSEKSIGGTSHKSGGAESQKLSVARKFKDQLFQLILRLENTTPHFIRCIKPNKLQSPGLYEQGLVLQQLKCCGVLEVVRISRAGFPTRMSHKKFSQRYGFLLQESLSSQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCFRGHLARCHIKELKKGISTLQSFVRGEKTRKEYAILLRRHRAAISIQKYQKARIARKRSKEVCDASVVIQSVIRGWLVRGCSGNIGLMSPGGLSENGSGDVLVKSSFLAELQRRVMKAEATLRDKEEENDILHQRVQQYENRWSEYELKMKSMEEMWQRQMRSLQSSLSIAKKSLSVDDSDRNYDASVDASHERGYSWELGTNNTTNESNGVRPMNAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASIDPDREFRRLKQMFDAWKKDYGGRLRETKVILNKIGNGGAMDRVKRKWWGRRNSTRI 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7087234 7102181 + CmaCh18G008110.1 Cma18g00811 314149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00811 1187 MobiDBLite consensus disorder prediction 98 120 - -
Cma18g00811 1187 Gene3D - 374 433 - -
Cma18g00811 1187 MobiDBLite consensus disorder prediction 44 75 - -
Cma18g00811 1187 MobiDBLite consensus disorder prediction 58 75 - -
Cma18g00811 1187 PANTHER MYOSIN 42 1187 - -
Cma18g00811 1187 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 42 1187 - -
Cma18g00811 1187 Gene3D Kinesin motor domain 179 793 IPR036961 -
Cma18g00811 1187 ProSiteProfiles IQ motif profile. 868 895 IPR000048 GO:0005515
Cma18g00811 1187 Coils Coil 984 1032 - -
Cma18g00811 1187 Gene3D - 797 865 - -
Cma18g00811 1187 CDD MYSc_Myo8 190 852 IPR036022 -
Cma18g00811 1187 Pfam Myosin head (motor domain) 178 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma18g00811 1187 PRINTS Myosin heavy chain signature 603 631 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma18g00811 1187 PRINTS Myosin heavy chain signature 302 329 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma18g00811 1187 PRINTS Myosin heavy chain signature 260 285 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma18g00811 1187 PRINTS Myosin heavy chain signature 550 578 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma18g00811 1187 PRINTS Myosin heavy chain signature 206 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma18g00811 1187 Gene3D - 869 916 - -
Cma18g00811 1187 Gene3D - 917 957 - -
Cma18g00811 1187 Gene3D Myosin VI head, motor domain, U50 subdomain 435 732 - -
Cma18g00811 1187 Gene3D - 560 754 - -
Cma18g00811 1187 SMART iq_5 914 936 IPR000048 GO:0005515
Cma18g00811 1187 SMART iq_5 888 910 IPR000048 GO:0005515
Cma18g00811 1187 SMART iq_5 865 887 IPR000048 GO:0005515
Cma18g00811 1187 SMART iq_5 937 959 IPR000048 GO:0005515
Cma18g00811 1187 Pfam IQ calmodulin-binding motif 891 909 IPR000048 GO:0005515
Cma18g00811 1187 Pfam IQ calmodulin-binding motif 941 955 IPR000048 GO:0005515
Cma18g00811 1187 Pfam IQ calmodulin-binding motif 870 887 IPR000048 GO:0005515
Cma18g00811 1187 MobiDBLite consensus disorder prediction 91 120 - -
Cma18g00811 1187 ProSiteProfiles IQ motif profile. 889 918 IPR000048 GO:0005515
Cma18g00811 1187 SMART MYSc_2a 170 865 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma18g00811 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 912 IPR027417 -
Cma18g00811 1187 ProSiteProfiles Myosin motor domain profile. 176 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01182 Cma-Chr1:8561028 Cma18g00811 Cma-Chr18:7087234 0 dispersed
Cma09g00895 Cma-Chr9:4423710 Cma18g00811 Cma-Chr18:7087234 0 dispersed
Cma18g00811 Cma-Chr18:7087234 Cma10g00745 Cma-Chr10:3388762 0 dispersed
Cma18g00811 Cma-Chr18:7087234 Cma04g01262 Cma-Chr4:6450923 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00811 - - csv:101222101 2042.31