Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00826 | ATGGGGAAGCTAAGCTTGAGCTGTTGGAGTAGCTTTGTTGAGAATTCAAAGCCTTACTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCCAAAGTCTCTCTTAGTAGAGGGATGAGCCATTATGTTCTCGTCGTATACCGACACGCTTTCGCTACCGCTTCTATTGCTCCTTTCGCTTTCTTCTTTGAACGGAGAGGACAACCGAAGATAACACTGAAAGTTTTCACTCAAATCTTCGTGTTGGCTTTACTTGGCCCCGTAATCGATCAAAACTTCTATTATGCTGGATTGAAATACACTTCACCAACTTTCTCGTGTGCCATGAGCAACATGCTGCCTGCAATGACATTCATGATGGCTTTGATCTTCAGGATGGAAAAATTGGAAATGAAGAAGCTGAGATGCCAAGCCAAGTTCTTGGGAACTTTGGTGACAGTGGTTGGTGCTATGCTGATGACATTATACAAAGGCCCACTGATTCAAATGGCTTGGTCTAAACACTCTCATGTTTCCACAAGTTCTAATGATCAAGCTTCTGCCAATAAAGATTGGTTCAAAGGCTCAATCTTCCTCATTATTGCCACTCTTGCTTGGTCTTCTCTTTTCGTCTTGCAGAATCAGGCATTGAAGACATACATGAACCACCAGCTAACCCTCACCACACTAGTATGCCTTATGGGGACTTTGCAAGCCATAGCTGTGACTGTAGTAGCCGAACACAAAGCTTCTGTTTGGAGAATTGGTTGGGACATGAACCTCCTTGCTGCCGCCTACGCTGGAATTGTGACGTCAAGTATTTCATATTATGTACAAGGGCTGGTGATGAAGAAGAGAGGACCTGTATTTGCAACAGCATTTAGCCCTTTGATGATGATCATTGTAGCCATCATGGGCTCTTTCATCCTCTCTGAAAAAATTTACCTTGGAGGAATAATAGGATCCATCTTGATAGTATTTGGATTATATTCAGTTCTTTGGGGGAAACACAAGGAGAATTTGGAGACCAAAAGTGCTGTTGATGATGATACTCATAAATTACCACAAGCAATTAAGCTTTCTTCTCAACCAAATAATAATAATAATTTGAATCTCGAACCTAATAAGCTCTTGAATTCACTTATTATTTCCATGCCCGACCCTGAAAGCCCCATCAAGCCGAACCAAAACCCATGA | 1191 | 41.73 | MGKLSLSCWSSFVENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFAFFFERRGQPKITLKVFTQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFMMALIFRMEKLEMKKLRCQAKFLGTLVTVVGAMLMTLYKGPLIQMAWSKHSHVSTSSNDQASANKDWFKGSIFLIIATLAWSSLFVLQNQALKTYMNHQLTLTTLVCLMGTLQAIAVTVVAEHKASVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFATAFSPLMMIIVAIMGSFILSEKIYLGGIIGSILIVFGLYSVLWGKHKENLETKSAVDDDTHKLPQAIKLSSQPNNNNNLNLEPNKLLNSLIISMPDPESPIKPNQNP | 396 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 7215575 | 7219760 | + | CmaCh18G008260.1 | Cma18g00826 | 314164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00826 | 396 | PANTHER | WAT1-RELATED PROTEIN | 12 | 370 | - | - | |
| Cma18g00826 | 396 | PANTHER | WAT1-RELATED PROTEIN | 12 | 370 | IPR030184 | GO:0016021|GO:0022857 | |
| Cma18g00826 | 396 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 52 | 162 | - | - | |
| Cma18g00826 | 396 | Pfam | EamA-like transporter family | 18 | 159 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma18g00826 | 396 | Pfam | EamA-like transporter family | 192 | 331 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma18g00826 | 396 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 253 | 336 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00157 | Cma-Chr3:2070672 | Cma18g00826 | Cma-Chr18:7215575 | 1.69E-152 | dispersed | |
| Cma06g00017 | Cma-Chr6:119518 | Cma18g00826 | Cma-Chr18:7215575 | 1.80E-164 | dispersed | |
| Cma06g00788 | Cma-Chr6:4113634 | Cma18g00826 | Cma-Chr18:7215575 | 4.13E-43 | dispersed | |
| Cma09g00799 | Cma-Chr9:3899192 | Cma18g00826 | Cma-Chr18:7215575 | 2.12E-124 | dispersed | |
| Cma11g01223 | Cma-Chr11:7830149 | Cma18g00826 | Cma-Chr18:7215575 | 1.15E-84 | dispersed | |
| Cma11g01226 | Cma-Chr11:7876255 | Cma18g00826 | Cma-Chr18:7215575 | 1.35E-84 | dispersed | |
| Cma14g00498 | Cma-Chr14:2435324 | Cma18g00826 | Cma-Chr18:7215575 | 2.53E-156 | dispersed | |
| Cma18g00826 | Cma-Chr18:7215575 | Cma03g00442 | Cma-Chr3:4615905 | 1.97E-117 | dispersed | |
| Cma05g01062 | Cma-Chr5:8438982 | Cma18g00826 | Cma-Chr18:7215575 | 5.56E-84 | transposed | |
| Cma11g01416 | Cma-Chr11:9307080 | Cma18g00826 | Cma-Chr18:7215575 | 2.48E-15 | wgd | |
| Cma18g00826 | Cma-Chr18:7215575 | Cma04g01306 | Cma-Chr4:6645135 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00826 | - | - | csv:101206648 | 619.387 |