Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00846 ATGGAGGAGACGAAGCCATCAGCTACAAATAATTGCCATACCGATGGCGAACCAGACACTGTTGAAGTTCAATTCACAGAATTATGTCAGAATGGATTACGTCTGGATGAGAGTTGTTGTAATCAAGCGTTGAGGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCGAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCTTTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGGATCCAGAGAGTTCACATTCAGGACCTGAGAACAATAGCTTCACTTTATGTCATATATTGAGAATTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTGAGTAATATCTATGGTGCGGATTGGGAAAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTTGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCAAGAATTCTTCTCCACCAGTGATGCTAATGTTGACAAGCAGTCAGCTAAATCCTGCCATACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACCTGCACCAATGGTTTGGTTTCCATTTTGGCTATATTAATTCTTCATGTTCCTGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTCGTTAAGAAAGGAGGAAAAGGAGTGGACCTTCATAGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTGATGGAGAAGGCCAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTTGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATCGACACTGAGGGTTTGATATACTTTGAAGACTTAATGGAGGAGGCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTGTTTGTTAATGACGAAGATAGTTTACTTGGGTCAGGCAGCTTGTCAGCAGGTGCTGTTACAATGAATGGCATCAAGAGGAAGTTTGACTCAATGGGCTCCCCTGCAAGGATGATGACTAGTCCAATGTCTCCACTTCGCTCTCCTTCTTCACATGTTAATGGCACTCTTAATAGTGGCAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCTATGACGACAGCAAAATGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAGACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGTAGGGCACATATAATATTAGAGGCCATATTTCCAAATAGTGCTCTAGGAGAACGTTGTATACCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCCACACATAAAACTGTTACAATGTTGTTTCCTGCAGTTTTGGAGAGAACTGGCATTACAGCTTTTGATCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAGTTGAGGCGACATCTTAATTCGTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCGTCAATGTACAACTCCCTGATTGTTGCTAAACCTTCCCTTGCTGCTGAAATAAACCGTATGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCGATTGCTGTTCAAATTAACTTTTCTGGTAGTGGGGTATCAACCATGCCGATTCTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGGTCACCGAAAAGATTGTGTACAGACTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCGTTCAGTAATATTAAGTCTAAGCTTCTACCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGAGGTGGCGAAACGTGTGCTGAAACTGGAATTAGCATATTTTTTAGCAAGATCGTCAAGTTGGCTGCTGTTAGAGTAAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCATTATTATTTAATCGTCACATTGACCAGATCATCCTCTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAGTGCAAGCCACAGGTCTTTCGCAACGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCTGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCGTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCAGCTGTTTCGACCATGAAAACCGACAGAGTTCCTCAAGTTATCAATAATAGTGATGCACCTTGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTTTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCATGCGTGGGGGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGATCTCACCGCCATAAACAACCGTTTGAATGGAACACGGAAACTCCGAGGCACGTTAAATTTTGACGACGCGGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCCGGTGCACCAATTAAATCTGAACAACCGGATTCTTAG 3060 41.83 MEETKPSATNNCHTDGEPDTVEVQFTELCQNGLRLDESCCNQALRLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKDPESSHSGPENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSNIYGADWENRLEAKELQANFVHLSLLSKYYKRVYQEFFSTSDANVDKQSAKSCHTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLHRSLCNVYDTSEEELREVMEKANSLIEDILKKKPCLASECNSKSLENIDTEGLIYFEDLMEEASLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMNGIKRKFDSMGSPARMMTSPMSPLRSPSSHVNGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPARPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIPGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPSLAAEINRMGLLAEPMPSLDAIAVQINFSGSGVSTMPILQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGISIFFSKIVKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAVSTMKTDRVPQVINNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7384877 7392241 + CmaCh18G008460.1 Cma18g00846 314184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00846 1019 Gene3D - 418 606 - -
Cma18g00846 1019 PANTHER BNACNNG22930D PROTEIN 1 1005 - -
Cma18g00846 1019 Pfam Domain of unknown function (DUF3452) 97 233 IPR024599 -
Cma18g00846 1019 MobiDBLite consensus disorder prediction 385 401 - -
Cma18g00846 1019 Gene3D - 703 892 - -
Cma18g00846 1019 MobiDBLite consensus disorder prediction 379 401 - -
Cma18g00846 1019 SMART DUF3452_2 84 233 IPR024599 -
Cma18g00846 1019 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 1005 IPR028309 GO:0006357|GO:0051726
Cma18g00846 1019 Pfam Retinoblastoma-associated protein B domain 740 867 IPR002719 GO:0005634|GO:0051726
Cma18g00846 1019 SUPERFAMILY Cyclin-like 423 618 IPR036915 -
Cma18g00846 1019 SMART RB_A_2 415 616 IPR002720 GO:0005634|GO:0051726
Cma18g00846 1019 Pfam Retinoblastoma-associated protein A domain 415 616 IPR002720 GO:0005634|GO:0051726
Cma18g00846 1019 Coils Coil 328 348 - -
Cma18g00846 1019 Coils Coil 267 291 - -
Cma18g00846 1019 Gene3D - 194 352 - -
Cma18g00846 1019 SUPERFAMILY Cyclin-like 738 907 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00846 Cma-Chr18:7384877 Cma04g01316 Cma-Chr4:6696621 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36793 PF01858 RB_A 7.80E-64 CL0065 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00846 K04681 - csv:101219810 1853.18