Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00847 ATGGATCAGTTTCCCAAAGAACTCGACAGAGAAGTATGCAACATGAACAAGATTGAACGAAAAGAGGAAGAGGAAGAGGAAGAAGACGAGGAGGAGGAGGAAGAAGATGTACAAGACGACTGGGACGATTGGAATGCAGACGAGGAAGAAGGTGAAGAAGGATTTGACTTGAATTTTCTGTGTTTGTTCTGCACATCGAAGTATAATGACTGCGCCACGCTGTTCAACCACTGCAACTCTGTCCATAATTTTGATTTTCACGGCATTAGGAAGGCTCTGGGTTTAGATTTTTATGGTTCGTTTAAAATTATCAACTACATACGATCTCAGGTAGCAGAAAATAGGTGTTGGAGCTGTGGTTTCTTGTGTCAATCAAGCCAAGATTTACAGAACCATTTGCACCAAACACTCAATCTCAATGAAATCAAGGCTCTTTGGAATGATGATAAATACCTGAAACCCTTCAGTGAAGATGATCCCATTTTGTACAGTTTTGCAGAAGACGAAGAGGATGATGACATTTCACCTATCACCAACAATCTTCAGAGAAATACAGATTCCAATTGTGGTAATTGCAATGTTGATGGAATGAATAGAGCAGATCCTCCATTTCATATCAACGGAAGCAAGGAAAATGAAATGGCAGATTGTAGTTCTACTTCACATGGTTATTTGAATACTCCAAGTAACTTAGAGGCCGTGATTGAGAATACCGTGAAAGCCACAGAGACCTTGAAATTGAACGATAAGACGCAGGAAGACGATCAATTAAAAATAACCAGAAGAAATTTTTATTCGAAGGATATCAAGAATGTAAATGAAAGCTACTTTGGTTCATATAGCTCTTTTGGCATACACAGAGAGATGTTAAGTGACAAGGTCAGAATGGATGCATATATGCAAGCTATTTTGCAAAACCCATCTCTCTTCCACAATGCAGCTGTGATGGATGTGGGCTGTGGAACAGGCATACTTAGTCTCTTTGCTGCAAAAGCAGGTGCATCAAGGGTTATTGCAGTTGAAGCAAGTGAAAAGATGGCAGCAGTGGCTACTCAAATTGCAAAAGATAACGGTCTCTTGCGGAATAGGAAACAGACTGGGGATTGTGGCATGTCAAGTGGGACTGTTGAAGTGGTTAATGGTATGGTAGAAGAACTTGATAAGAACATAGAGATTCAGCCTCACAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTATGAGTCAATGCTCAGCTCAGTGCTCTTTGCAAGGGATCGTTGGTTGAAGCCTGGAGGTGCCATCTTACCAGATACTGCCACAATTCTTGTTGCAGGATTTGGAATTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTACGGTTTCAATATGTCTTGTGTAGGGAAGGAACTTGTAGAGGATGCTGCCAAAGGTCCCATCGTTGACACTGTGGAGGCTAACGATTTAGTTACTAGTGCAGCAATACTTCATACTTTTGATCTAGCAACTATGCATGCTGACGAAGTTGACTTCACTGCAAGTACTGAGTTGGAACCAAATTTGCATAATCCTTCAAGCAAATCAGAAAACGTTGAAGTTGAAACATCTTGGTGTCATGGAGTTGTCTTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAAGAATCACCGGCTGTTCTATCTACATCCCCATACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCAGAGAACCAATTGCTATAACATCTAGCAAATCTACCACCAACAAATCAGCAACAGTGGGCAGCTTTGCCTCTCCTGCTGTCAAAGTTCATTTGCGACTTAGCATTGTCCGTGCGCCCGAACATCGAAGCATTGACATTTCACTCGAGACTACTGGGATTGCCAGTGATGGTAGGAAGCACCATTGGCCCGTACAACTTTTCACACTAAGATAA 1944 41.41 MDQFPKELDREVCNMNKIERKEEEEEEEDEEEEEEDVQDDWDDWNADEEEGEEGFDLNFLCLFCTSKYNDCATLFNHCNSVHNFDFHGIRKALGLDFYGSFKIINYIRSQVAENRCWSCGFLCQSSQDLQNHLHQTLNLNEIKALWNDDKYLKPFSEDDPILYSFAEDEEDDDISPITNNLQRNTDSNCGNCNVDGMNRADPPFHINGSKENEMADCSSTSHGYLNTPSNLEAVIENTVKATETLKLNDKTQEDDQLKITRRNFYSKDIKNVNESYFGSYSSFGIHREMLSDKVRMDAYMQAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLLRNRKQTGDCGMSSGTVEVVNGMVEELDKNIEIQPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGIGGTSLPFWENVYGFNMSCVGKELVEDAAKGPIVDTVEANDLVTSAAILHTFDLATMHADEVDFTASTELEPNLHNPSSKSENVEVETSWCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPIAITSSKSTTNKSATVGSFASPAVKVHLRLSIVRAPEHRSIDISLETTGIASDGRKHHWPVQLFTLR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7393281 7397285 - CmaCh18G008470.1 Cma18g00847 314185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00847 647 Coils Coil 8 40 - -
Cma18g00847 647 Pfam Methyltransferase domain 315 430 IPR041698 -
Cma18g00847 647 ProSitePatterns Zinc finger C2H2 type domain signature. 61 82 IPR013087 -
Cma18g00847 647 SUPERFAMILY beta-beta-alpha zinc fingers 39 173 IPR036236 -
Cma18g00847 647 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 29 645 - -
Cma18g00847 647 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 29 645 IPR025799 GO:0016274|GO:0018216
Cma18g00847 647 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 279 586 IPR029063 -
Cma18g00847 647 Pfam C2H2 type zinc-finger (2 copies) 61 135 IPR041661 -
Cma18g00847 647 Gene3D - 437 641 - -
Cma18g00847 647 MobiDBLite consensus disorder prediction 1 41 - -
Cma18g00847 647 MobiDBLite consensus disorder prediction 1 21 - -
Cma18g00847 647 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 273 607 IPR025799 GO:0016274|GO:0018216
Cma18g00847 647 CDD AdoMet_MTases 315 433 - -
Cma18g00847 647 Gene3D Vaccinia Virus protein VP39 264 434 IPR029063 -
Cma18g00847 647 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00703 Cma-Chr10:3160687 Cma18g00847 Cma-Chr18:7393281 1.90E-65 dispersed
Cma11g00678 Cma-Chr11:3284757 Cma18g00847 Cma-Chr18:7393281 3.95E-66 dispersed
Cma15g01123 Cma-Chr15:7153624 Cma18g00847 Cma-Chr18:7393281 3.03E-07 dispersed
Cma17g00325 Cma-Chr17:1761730 Cma18g00847 Cma-Chr18:7393281 6.10E-38 dispersed
Cma18g00847 Cma-Chr18:7393281 Cma04g01317 Cma-Chr4:6704408 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00847 K11436 - csv:101215999 952.97