Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00849 ATGGCTGATGGCAGTCCAGGGACCGACATCTCTACAGACGTCGACACAGATGACAAAAACCAGAGGCTTGATATGGTTCTGCTTAATGCTGCTGCGGCTTCTGATTCAAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCCGAAAAAGTCGACTGCGGAAAAAGGCATATGTTCAACAGCTCGAGAGTAGTCGTTTAAAGTTGACCCAACTCGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCTGGAGATCAGGCTCATTCAATGGCTGGAAATGGAGCCATGGCATTTGATGTGGAATACGCCCGTTGGTTGGAAGACCAAAACAAGCAGATCAATGAACTGAGAGCAGCCGTAAACTCTCATGCAAGCGATACCGAACTTCGAATGGTTGTCGATGGCATCTTGCTTCACTACGACGAGTTTTTTCAGTTAAAAGGCGTCGCTGCAAAGGCTGATGTTTTTCACTTATTGTCTGGCATGTGGAAAACTCCAGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTAAATCAATTAGAGCCGCTCACAGAACAGCAATTGTTGGGCATATCAAACTTGCAGCAGTCTTCACAACAAACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAGCAATCATTGGCTGAGACATTGTCCAGTGGATCTCTTGGCTCTTCGAATGCGTCTGGCAATACACTGCAACAAATGCACCGGATATTGACAACTCGTCAATCAGCTCGTGCTCTTCTTGCAATCCATGATTACTTCTCTAGACTACGAGCTCTTAGTTCCCTGTGGCTTGCTCGTCCAAAAGAGTGA 906 46.47 MADGSPGTDISTDVDTDDKNQRLDMVLLNAAAASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEDQNKQINELRAAVNSHASDTELRMVVDGILLHYDEFFQLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNASGNTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7429501 7435074 - CmaCh18G008490.1 Cma18g00849 314187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00849 301 PANTHER TRANSCRIPTION FACTOR TGA9 261 301 - -
Cma18g00849 301 PANTHER TRANSCRIPTION FACTOR TGA9 1 260 - -
Cma18g00849 301 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700|GO:0006355
Cma18g00849 301 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700|GO:0006355
Cma18g00849 301 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 261 301 - -
Cma18g00849 301 Coils Coil 123 143 - -
Cma18g00849 301 ProSiteProfiles DOG1 domain profile. 112 298 IPR025422 GO:0006351|GO:0043565
Cma18g00849 301 SUPERFAMILY Leucine zipper domain 47 90 IPR046347 GO:0003700|GO:0006355
Cma18g00849 301 Coils Coil 66 93 - -
Cma18g00849 301 Pfam Basic region leucine zipper 43 89 IPR004827 GO:0003700|GO:0006355
Cma18g00849 301 SMART brlzneu 43 106 IPR004827 GO:0003700|GO:0006355
Cma18g00849 301 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 260 - -
Cma18g00849 301 MobiDBLite consensus disorder prediction 1 49 - -
Cma18g00849 301 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351|GO:0043565
Cma18g00849 301 Gene3D - 46 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00908 Cma-Chr15:4699844 Cma18g00849 Cma-Chr18:7429501 9.76E-139 dispersed
Cma18g00849 Cma-Chr18:7429501 Cma06g00087 Cma-Chr6:480546 1.12E-106 dispersed
Cma18g00849 Cma-Chr18:7429501 Cma04g01321 Cma-Chr4:6717277 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36794 PF14144 DOG1 1.40E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00849 K14431 - csv:101216885 483.026