Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00866 ATGTCGTTTGCAAATCCTTATTTTGAAGACGTTCGGACGAAACCGGAGGTAATCGATCCTCCCCAAGATGAGGACATGATGGATGTTAGTGAAAGTGTTAGTGATCCTACTCGAAATGGAGGAAAGCCTAATGTAGCTGTCTCCAGCAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTGAATGTTATGTACCCTCCCATTCATCATTGTTCGAATGGTCACACATTGTGTTCGGGTTGCAAGCCTAGGGTGCACAACCGGTGCCCGACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCTGCATCTTTGGAACTTCCATGTACATATCAAACCTTTGGGTGCGCGGGCATATACCCGTACTATAGCAAGCTGAAACATGAATCTCAATGTGCCTATCGACCCTATAACTGTCCGTATGCGGGGTCGGAATGCATGGTTGTTGGTGATATTCCATTTTTGGTAGCACACCTAAAGGATGATCACAAAGTCGACATGCATAATGGGAGCACTTTCAATCATCGATACGTCAAGTCAAACCCGCAGGAGGTCGAAAATGCTACCTGGATGCTAACGGTTTTCAGCTGTTTTGGTCATTATTTTTGTTTACATTTCGAAGCTTTCCAACTCGGAATGGCACCTGTCTATATAGCCTTCTTGCGCTTCATGGGTGACGATAACGAGGTGAAGAACTACAGTTATAGCCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGAGACAGTCATCGGAAGGTGCGAGACAGCTTTGACGGGCTTATTATCCAACGAAACATGGCTCTGTTCTTCTCGGGCGGAGATCGGAAGGAATTGAAGCTGAGGGTAACTGGTAGGATTTGGAAGGAGCAGTGA 918 46.73 MSFANPYFEDVRTKPEVIDPPQDEDMMDVSESVSDPTRNGGKPNVAVSSSVRELLECPVCLNVMYPPIHHCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCTYQTFGCAGIYPYYSKLKHESQCAYRPYNCPYAGSECMVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGHYFCLHFEAFQLGMAPVYIAFLRFMGDDNEVKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7539215 7543633 + CmaCh18G008660.1 Cma18g00866 314204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00866 305 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma18g00866 305 SUPERFAMILY RING/U-box 46 99 - -
Cma18g00866 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 109 IPR013083 -
Cma18g00866 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 14 305 - -
Cma18g00866 305 SUPERFAMILY TRAF domain-like 110 302 - -
Cma18g00866 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Cma18g00866 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 14 305 - -
Cma18g00866 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Cma18g00866 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Cma18g00866 305 CDD Sina 171 299 - -
Cma18g00866 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Cma18g00866 305 CDD RING-HC_SIAHs 55 93 - -
Cma18g00866 305 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01338 Cma-Chr4:6829073 Cma18g00866 Cma-Chr18:7539215 0 dispersed
Cma04g02211 Cma-Chr4:15434987 Cma18g00866 Cma-Chr18:7539215 0 dispersed
Cma18g00866 Cma-Chr18:7539215 Cma18g01332 Cma-Chr18:10151205 1.46E-150 dispersed
Cma18g00866 Cma-Chr18:7539215 Cma15g00822 Cma-Chr15:4132604 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00866 K04506 - csv:101205198 615.535