Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00867 ATGTCGTTGAAGTTGCACCATATTGATCTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTGAATGATATCTCAGCTCAGTCCACAAATAAGTACTGTGCAGATTGTGGATCTCCAGACCCAAAATGGGTATCGTTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGGAGCCTTGGAGTGCACATATCCAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGAGGCTTTGATGAGTGCTGGTGGAAATACTGCTGTAAACAAGAAGTATGAAGTTTACATCCCAAAAGGCAACAGAAAACCTAAGCCAGATTCCTCCATAGAGGATCGTCTAGATTTTATAAGGAAAAAATATCAGCTGCTGCAATTTGCAAGCTTTGATGACCAGTTTTTCTGTGCTTTTCCACCCACGGAGAAGAGAACTGTGTCATTCTCCAATACCACTTCGAAGGACAATGGAAACCAAGAAAAGCGAAATAATGATAAACAACCAACAAAAAGTCGAATTGGAAATGCATTCCGGAATAGCTGGGGAAGAAAAGATTCTGAACGTAGGAGCTGCAAGAAGGGAAATTCATTGGTGTTAAGCAATTCAATGGCAGGTATGGTTGAATTCGTTGGTTTAGTTAAGGTGAACGTGGTTAGAGGAACCAATTTAGCTGTGAGGGACGTCATCACGAGCGATCCGTATGTAATTCTCTCGTTGGGGAATCAATCAGTGAAGACTCGTGTTATAAAGAGCAGTTTGAACCCAGTCTGGAATGAAAGCCTAATGTTGTCTATTCCAGATTTCGTTCCTCCATTAAGGGTGCTTGTATATGACAAAGATACGTTTTCAACCGATGATTTCATGGGTGAAGCAGAAATTGATATCCATCCGCTGCTCTCCGCAGCCCAAGCTTGTGAGAAGTCCACAGCCTGTGAACCCATGCAGCTAGCAAATTGGGTTGCAGGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTGGATGGGAAGCTACGACAAGACGTCTCCTTGAAGCTGCAGAACGTCGAGAGGGGCGTGCTGGATATGGAGCTTGAATGTCTTCCCCTTTCTCAGTAG 1116 43.82 MSLKLHHIDLKGGSGTQKRLNDISAQSTNKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVEALMSAGGNTAVNKKYEVYIPKGNRKPKPDSSIEDRLDFIRKKYQLLQFASFDDQFFCAFPPTEKRTVSFSNTTSKDNGNQEKRNNDKQPTKSRIGNAFRNSWGRKDSERRSCKKGNSLVLSNSMAGMVEFVGLVKVNVVRGTNLAVRDVITSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLSAAQACEKSTACEPMQLANWVAGKENTLAKDGIISLVDGKLRQDVSLKLQNVERGVLDMELECLPLSQ 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7545002 7549512 + CmaCh18G008670.1 Cma18g00867 314205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00867 371 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 212 307 IPR035892 -
Cma18g00867 371 CDD C2_ArfGAP 214 358 - -
Cma18g00867 371 ProSiteProfiles C2 domain profile. 197 313 IPR000008 -
Cma18g00867 371 CDD ArfGap 20 126 - -
Cma18g00867 371 MobiDBLite consensus disorder prediction 150 192 - -
Cma18g00867 371 Gene3D Arf GTPase activating protein 6 138 IPR038508 -
Cma18g00867 371 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Cma18g00867 371 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Cma18g00867 371 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 8 371 - -
Cma18g00867 371 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Cma18g00867 371 SMART C2_3c 216 311 IPR000008 -
Cma18g00867 371 Pfam C2 domain 216 308 IPR000008 -
Cma18g00867 371 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Cma18g00867 371 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Cma18g00867 371 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Cma18g00867 371 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Cma18g00867 371 Gene3D C2 domain 214 366 IPR035892 -
Cma18g00867 371 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 371 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02214 Cma-Chr4:15444552 Cma18g00867 Cma-Chr18:7545002 1.55E-172 dispersed
Cma15g00820 Cma-Chr15:4119375 Cma18g00867 Cma-Chr18:7545002 3.77E-169 dispersed
Cma18g00511 Cma-Chr18:3056927 Cma18g00867 Cma-Chr18:7545002 3.26E-102 dispersed
Cma18g00867 Cma-Chr18:7545002 Cma11g00314 Cma-Chr11:1562997 3.90E-38 dispersed
Cma18g00867 Cma-Chr18:7545002 Cma04g01337 Cma-Chr4:6824795 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00867 K12486 - csv:101221541 641.728