Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00879 ATGTTTAACGGGGAGGGGTCGTCGTCAGTAACTTCATCGCCGTTGCAGCTCTTTCCATGGTCGTTATCGCCTGGTATAGGATCGCCATACCCTTTTCTAAGGGAGCTGAAATCTGAAGAGAGGGGCTTATGTCTGATTCACCTTCTTCTTGCCTGTGCCAACCAAGTTGCCATTGGCAACATCGAAAATGCCAATGTTGGCCTCGAGCAAATTTCCCACCTAGCTTCGCCCGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACCGAGGCACTCGCCGATCGGATACTCAAATCGTGGCCAGGCTTACACAAAGCCTTGAACTCAACCAAAATATTGTCGGTTCCGGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAGCTATGTCCTTTCTTGAAGCTTGCATATGTGATAACTAATCAGGCTATCATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCATGTGAGCCTGCTCAATGGATAAACCTTCTTCAGACATTGAAAGACCGACCAGACGGTCCGCCCCACGTGAGAATAACCGGAATTCACGAACAGAAGGAGGTGTTGGAACAAATGGCTGTTCGGCTAACCGAAGAGGCCGAAAAATGGGACATACCATTTCAGTTCACCCCAGTTGTTAGCAAGTTAGAGAATCTCGACCTTGAAAGTTTAAGGGTGAAGACAGGAGAAGCACTCGCAGTGAGCTCAGTACTCGAACTTCACACGATTTTAGCCACGGACGACGATAAGACAAAAACGTCGCCATCTGCATCAAAGAACTTGCAAAAGCTCCTACGTATGAAGCAGAGAACACTCGGAGAGTGGCTCGAAACAGATTCGTTGCAGGTTTTTAGTAGTAGCCCGGATTCAGCGTCGGTATGTTCGCCATCAGGATTGAATCCTTCACAAAAGATGAATAGTTTTTTGAATGCACTGTGGGGGCTATCTCCAAAAGTGATGGTAATAACAGAGCAAGAATCAAACCTGAATGGATCAGGATTGATGGAGAGAGTACTAGAAGCACTAAACTTCTATGCTGCATTGTTTGATTGCTTGGAATCAACGGTGTCGAGGTCGTCGATCGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAGAACATCATTGCTTGCGAGGGAGCGGAGAGAAGGGAGAGACACGAAAAGCTCGAGAAATGGATAGTTCGATTCGAAAGCGTGGGGTTCGGGAGGGTTGGATTGAGTTATAATAGTATGTTTCTGGGAAATAGATTGTTGCAGAGCAATGGATATGATGGTTATAAAATCAAAGAAGAGAATGGATTTTTGTTCATTTGTTGGCAAGATAGGCCACTTTTTTCTGTATCAGCTTGGGGGTTTCAAAGGCAAAGCTGA 1404 45.51 MFNGEGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHVRITGIHEQKEVLEQMAVRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHTILATDDDKTKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFSSSPDSASVCSPSGLNPSQKMNSFLNALWGLSPKVMVITEQESNLNGSGLMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERRERHEKLEKWIVRFESVGFGRVGLSYNSMFLGNRLLQSNGYDGYKIKEENGFLFICWQDRPLFSVSAWGFQRQS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7609105 7610508 - CmaCh18G008790.1 Cma18g00879 314217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00879 467 ProSiteProfiles GRAS family profile. 36 462 IPR005202 -
Cma18g00879 467 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 3 463 - -
Cma18g00879 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 463 IPR005202 -
Cma18g00879 467 Pfam GRAS domain family 45 461 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00910 Cma-Chr10:4525897 Cma18g00879 Cma-Chr18:7609105 0 dispersed
Cma18g00879 Cma-Chr18:7609105 Cma04g02984 Cma-Chr4:19554944 2.50E-74 dispersed
Cma18g00879 Cma-Chr18:7609105 Cma11g00865 Cma-Chr11:4396210 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36798 PF03514 GRAS 4.50E-135 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00879 - - cmo:103489486 874.004