Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00883 | ATGGGGAAGAAAGGGGGTTGGTTTGCTGCAGTGAGGAAGGTTCTCAGTAACAAGATACAAGAAAGATCCAAGAAAAAATGGTTCCAAAGGGAGGAGAGTGTGGACACATTTGTGGAACCATCCCTGTTAGATGTTCCCGCGGAACCTCCTCCTATGGAAGATGATATCAATCAAACTAAGCCAGAGGATGAACCGAGCGAGCTTCTGCATTCCGTGGCGGTGGAGCCTGCTGTTGATGAAGCTCAGCTGGCTGTGGATGATGAACATCTACCCAGTATTATACCCTGTAAGCCAGAAATGACTGAGGAAACAGGAGCTATTATTATTCAATCAGCCTTTCGTGGATATAAGGCGAGGAAAGTATCAAGGGGTCTCAAAGCGATAATGAGATTGAGGTCGTTGGTACAAGGCCACTCTGTGAAACGGCAGGTGGCCTCTACTTTAAAAAGTATGCAAACGCTTGCACATGTACAGTCAGAGGTTCGTGCAAGGAGAGTAAGAATGTCTGAAGAAAATCAGGATTTCCAGCGGCAACTTTGTAACAAACGTGAGAAAGATCATGAGAAGTTCAGAACTTCTCGAACATGGAAGAGTTCTTCAAAAACTACAACCCATTCTGTCATGGATTCAAATAATCCCTACTGGGGCTGGAGTTGGTTGGAGAGATGGATGGCAGCTCGCCCATGGGAACTCCAAAGCACAGCCGATCACCCAGATCACATTTCTGTCACAAACGTCCCAACTCATGCATCTACAATCGACATAATCCAAGTTTATGCTCGTCGCGATCCGAACTCCCCTACGAAGCCTTCTCCAAGGACTCCTACTAGCCAAAAGCCAAGCCAAGTGCATAGGCATCAGTCACCTTCCATTCCTAGAGCATTATCTTCATCATCTAGCAAAAAGAAAACAAATGTAGCCAACTTAAAGGTAGGCAGCTGGAGTGGGGATGATGACATGAGAAGCCCCGTGAGTGTCAACTCAAAGCTCACCCGGAGGCATAGTATAGGAGGGTCATCATTCAGGGATGACATAAGCATTGCCAGTTTACCTTCAGTTTCGAGTTACACGCCAACGTCGAAGACGGCTGCTAAGGCTCGGTCCCGGTTGGCGAGTCCATCTGTGAAACCGAAGAAAGAGGCAATGGAAAAAGGATCTGCAAGCACAGGTTCTGCAAAGAAGCGGCTCTCCATTACAGGTTCCCCTGCTAAACCAAGGAGGCTATCAAGTCCTCCCATTGTGAATAGTAGCCAAGTACATTAA | 1263 | 47.03 | MGKKGGWFAAVRKVLSNKIQERSKKKWFQREESVDTFVEPSLLDVPAEPPPMEDDINQTKPEDEPSELLHSVAVEPAVDEAQLAVDDEHLPSIIPCKPEMTEETGAIIIQSAFRGYKARKVSRGLKAIMRLRSLVQGHSVKRQVASTLKSMQTLAHVQSEVRARRVRMSEENQDFQRQLCNKREKDHEKFRTSRTWKSSSKTTTHSVMDSNNPYWGWSWLERWMAARPWELQSTADHPDHISVTNVPTHASTIDIIQVYARRDPNSPTKPSPRTPTSQKPSQVHRHQSPSIPRALSSSSSKKKTNVANLKVGSWSGDDDMRSPVSVNSKLTRRHSIGGSSFRDDISIASLPSVSSYTPTSKTAAKARSRLASPSVKPKKEAMEKGSASTGSAKKRLSITGSPAKPRRLSSPPIVNSSQVH | 420 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 7634836 | 7638800 | - | CmaCh18G008830.1 | Cma18g00883 | 314221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00883 | 420 | MobiDBLite | consensus disorder prediction | 345 | 367 | - | - | |
| Cma18g00883 | 420 | MobiDBLite | consensus disorder prediction | 182 | 206 | - | - | |
| Cma18g00883 | 420 | MobiDBLite | consensus disorder prediction | 42 | 64 | - | - | |
| Cma18g00883 | 420 | MobiDBLite | consensus disorder prediction | 262 | 420 | - | - | |
| Cma18g00883 | 420 | PANTHER | IQ-DOMAIN 5-RELATED | 202 | 417 | - | - | |
| Cma18g00883 | 420 | Pfam | IQ calmodulin-binding motif | 106 | 120 | IPR000048 | GO:0005515 | |
| Cma18g00883 | 420 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 202 | 417 | - | - | |
| Cma18g00883 | 420 | MobiDBLite | consensus disorder prediction | 275 | 311 | - | - | |
| Cma18g00883 | 420 | ProSiteProfiles | IQ motif profile. | 102 | 130 | IPR000048 | GO:0005515 | |
| Cma18g00883 | 420 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 199 | - | - | |
| Cma18g00883 | 420 | MobiDBLite | consensus disorder prediction | 320 | 335 | - | - | |
| Cma18g00883 | 420 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 1 | 199 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g02600 | Cma18g00883 | CCT | |
| Cma15g00434 | Cma18g00883 | CCT | |
| Cma04g02600 | Cma18g00883 | ECH | |
| Cma15g00434 | Cma18g00883 | ECH | |
| Cma04g01355 | Cma18g00883 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma15g00434 | Cma-Chr15:1943695 | Cma18g00883 | Cma-Chr18:7634836 | 1.09E-102 | dispersed | |
| Cma18g00883 | Cma-Chr18:7634836 | Cma10g00857 | Cma-Chr10:4163007 | 1.29E-24 | dispersed | |
| Cma18g00883 | Cma-Chr18:7634836 | Cma03g01253 | Cma-Chr3:8249643 | 1.97E-55 | wgd | |
| Cma18g00883 | Cma-Chr18:7634836 | Cma04g01355 | Cma-Chr4:6912495 | 2.00E-136 | wgd | |
| Cma18g00883 | Cma-Chr18:7634836 | Cma04g02600 | Cma-Chr4:17780558 | 4.87E-101 | wgd | |
| Cma18g00883 | Cma-Chr18:7634836 | Cma07g00937 | Cma-Chr7:4504725 | 2.11E-49 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00883 | - | - | cmax:111466344 | 768.074 |