Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00888 ATGGCAGCCTGTGGAGAAGAGCAGCGTACTTTGGAAGATACTTCAACTTGGGCTGTTGCGGTTGTTTGTTTTTTCTTGGTTGCTATTTCAATCTTCATTGAACATCTCATTCACCTCACCGAAAAGTGGCTGGAGAGAAGGCACAAGCCAGCACTTGTTGAAGCTCTAGAAAAGGTTAAAGCAGAGCTTATGCTGTTGGGATTTATATCCCTACTTCTAACTATTGGCCAAGATGCTGTCACTAAAATTTGCGTTTCGAGGGAGCTTGCGGCAACTTGGCGTCCCTGTGCAGGAAAAGAAAAAGCACCCAAGAACAGCCGTCTTAAACTTTTTGAATTTTTAGATCCTGATTATGGATCGAGGCGTATTTTAGCTTCAAAAGGAAACGATGCATGTGCTGATAGGGGCCAAGTCGCCTTTGTGTCTGCATATGGAATCCACCAGCTCCATATTTTCATCTTTGTACTGGCTGTCTTCCATGTCTTATACTGCATCGCCACTTTGGCTTTGGGCAGAACAAAGATGAGAAAATGGAAGGCTTGGGAGGACGAGACAAAAACACTTGAATACCAGTACTATAATGATCCAGCAAGGTTTAGATTTGCTAGAGATACAACGTTTGGACGCCGACACTTGAGCTTTTGGAGTCGTACACCAGTTTTCCTCTGGATTGTTTGTTTCTTCAGACAATTCTTTGGATCAGTTACCAAGGTTGATTACATGACATTGAGACATGGATTCATCGTTGCTCATTTGGCCCCCGGAAGTGAAGTAAAATTTGATTTCCACAAATACATTAGCAGATCTCTCGAAAATGATTTTAAAGTTGTTGTGGGGATTAGCCCAGCGATGTGGCTATTTGCTGTTCTGTTCATCCTAACCAATACGCATGGGTGGTATTCATATCTATGGCTGCCTTTCATCTCCTTAATTATAATTCTATTGGTGGGAACGAAGCTCCATGTTATCATAACAAAGATGGGATTGACAATTCAAGAAAGGGGCCATGTTATAAAGGGTGTTCCCGTCGTTCAGCCCCGGGATGATCTCTTTTGGTTCGGACGCCCACAACTTATTCTGTTTCTGATTCACTTTGTTCTCTTTCAGAATGCATTTCAGCTTGCCTTCTTTGCTTGGACCACATATGCATTTAGCTTGAGATCTTGCTTCCATCAGAAGATTGAAGACATTGCCATTAGACTCTCAATGGGGGTCATCATACAAGTTCTATGCAGTTATGTGACGCTCCCACTCTATGCTCTGGTTACTCAGATGGGCTCTAACATGAAACCAACCATTTTCAACGAACGAGTAGCAACGGCATTGAAGAACTGGCACCACTCTGCCAAAAAACACATGAAGCAACACCGCAACCCGGATGGTACCTCGCCATTCTCAAGCAGGCCAGCTACTCCAACGCACGGTATGTCTCCCCTCCACCTTCTGCACAAACATCAGCAGAGCAGCACATCTCCCAGGCTATCTGATGCTGAACACGACCGTTGGGGCATTGAAGAGCGGCCTCTTTCACATCATAGTAGAGCTCATGATCATCAAGAACACGAACATTCCATTCGACCTTCTTCACATCATAGTAGAGCCCATGATCATCAAGAACACGAACATTCCATTCGACCTTCTTCACATCATAGTAGAGCCCATGATCATCAAGAACACGAACATTCTGTTTCCAGTGGAGAACAGGAGATGACAGCTCAACAGCCAAGTTCAACCGTACCAGTTGGATCTAATTTGAGAGGATTCTTTGTGTTATTGATCGTTGTGGATATGGAGGTGAGACCCAATCCGACGGGCGACAATTCCTCGATCTCGCAGCAGCATCTCACCAGTTCTTCATTGAAGCAGCCGTCCGCTTCTTCTAATCCTATCGACTCCAACGCTGTTGCGCAGAGGCTGCAAAAGGAATTGATGTCACTGATGATGAGTGGAGATGATCTTGGTGTCTCAGCTTTTCCTGAAGGTGAGAGCATTTTCACATGGATAGGCACGATTGAGGGTGGGAAAGGAACTGCATATGAGGGTTTGTCTTACAAACTCTCTTTACATTTTCCCATGGAGTACCCTTTCAAGCCACCCCTTGTTAAGTTCGAGACGATGTGCTTCCATCCAAATGTCGACCAATATGGCAACATTTGTCTCGACATTCTTCAGGATAAGTGGTCTTCAGCATATGATTGCAGAACCATTCTTTTGTCTATTCAAAGCCTATTAGGAGTTGTGTTTACAATGCAGAGTCCAACCCAGAGAGTCCTCTCAACAGCTATGCTGCTGCTCTTTGGAATAACAAGGAAGATTACAGAAAGATGGTCCACAAACAGTATTTTTTGGGTGCAGTCACGGAAGGCTGATTTTGAAAAGCCGAGTAGAGAACAAACATCGACACCGCTAAAGCTCGAGATAATAAAAGAGTTGTTGACAGAAGAACTTTACCTCTTTAGAAACCATGGCTTGGACGGGTGA 2481 44.3 MAACGEEQRTLEDTSTWAVAVVCFFLVAISIFIEHLIHLTEKWLERRHKPALVEALEKVKAELMLLGFISLLLTIGQDAVTKICVSRELAATWRPCAGKEKAPKNSRLKLFEFLDPDYGSRRILASKGNDACADRGQVAFVSAYGIHQLHIFIFVLAVFHVLYCIATLALGRTKMRKWKAWEDETKTLEYQYYNDPARFRFARDTTFGRRHLSFWSRTPVFLWIVCFFRQFFGSVTKVDYMTLRHGFIVAHLAPGSEVKFDFHKYISRSLENDFKVVVGISPAMWLFAVLFILTNTHGWYSYLWLPFISLIIILLVGTKLHVIITKMGLTIQERGHVIKGVPVVQPRDDLFWFGRPQLILFLIHFVLFQNAFQLAFFAWTTYAFSLRSCFHQKIEDIAIRLSMGVIIQVLCSYVTLPLYALVTQMGSNMKPTIFNERVATALKNWHHSAKKHMKQHRNPDGTSPFSSRPATPTHGMSPLHLLHKHQQSSTSPRLSDAEHDRWGIEERPLSHHSRAHDHQEHEHSIRPSSHHSRAHDHQEHEHSIRPSSHHSRAHDHQEHEHSVSSGEQEMTAQQPSSTVPVGSNLRGFFVLLIVVDMEVRPNPTGDNSSISQQHLTSSSLKQPSASSNPIDSNAVAQRLQKELMSLMMSGDDLGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGVVFTMQSPTQRVLSTAMLLLFGITRKITERWSTNSIFWVQSRKADFEKPSREQTSTPLKLEIIKELLTEELYLFRNHGLDG 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7659471 7668598 + CmaCh18G008880.1 Cma18g00888 314226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00888 826 MobiDBLite consensus disorder prediction 459 473 - -
Cma18g00888 826 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 634 791 IPR000608 -
Cma18g00888 826 PANTHER MLO-LIKE PROTEIN 5 547 - -
Cma18g00888 826 MobiDBLite consensus disorder prediction 510 580 - -
Cma18g00888 826 Gene3D Ubiquitin Conjugating Enzyme 629 762 IPR016135 -
Cma18g00888 826 Pfam Ubiquitin-conjugating enzyme 638 754 IPR000608 -
Cma18g00888 826 PANTHER MLO-LIKE PROTEIN 1 5 547 IPR004326 GO:0006952|GO:0016021
Cma18g00888 826 Pfam Mlo family 8 485 IPR004326 GO:0006952|GO:0016021
Cma18g00888 826 MobiDBLite consensus disorder prediction 446 478 - -
Cma18g00888 826 CDD UBCc 637 744 IPR000608 -
Cma18g00888 826 SUPERFAMILY UBC-like 631 745 IPR016135 -
Cma18g00888 826 SMART ubc_7 637 804 - -
Cma18g00888 826 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 708 723 IPR023313 -
Cma18g00888 826 MobiDBLite consensus disorder prediction 566 580 - -
Cma18g00888 826 MobiDBLite consensus disorder prediction 603 630 - -
Cma18g00888 826 MobiDBLite consensus disorder prediction 510 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00883 Cma-Chr2:5245432 Cma18g00888 Cma-Chr18:7659471 0 dispersed
Cma13g00188 Cma-Chr13:1437806 Cma18g00888 Cma-Chr18:7659471 0 dispersed
Cma18g00888 Cma-Chr18:7659471 Cma20g00477 Cma-Chr20:2307515 0 dispersed
Cma20g00099 Cma-Chr20:429843 Cma18g00888 Cma-Chr18:7659471 5.06E-48 dispersed
Cma04g01360 Cma-Chr4:6951852 Cma18g00888 Cma-Chr18:7659471 1.86E-93 transposed
Cma18g00888 Cma-Chr18:7659471 Cma04g01359 Cma-Chr4:6946409 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00888 K08472 - csv:101218929 956.436