Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00891 | ATGGCGAAAGACGACTTGACGGCGCGGGCGTTCTCCGGCAAGGACTACCAGGACCCTCCTCCTGCGCCGCTGATCGACGCGGCGGAGGTAGGGAAGTGGTCCTTTTTCAGAGCCCTGATTGCTGAGTTTGTCGCCACTCTCCTGTTTCTGTATATCACCATCTTGATTATTATTGGCCATAGTAGCCAGTCCGACCCCCACAAACTTGGCGGCAACGCTTGCGGCGGCGTTGGCATCCTCGGTATCGCTTGGGGCTTTGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATTTCAGGCGGGCACATCAACCCGGCGGTGACATTCGGGCTATTCTTAGCCCGGAAAGTGTCGCTGGTTCGAGCAGTGGCGTACATGATAGCTCAGTGCTTGGGAGCCATATGCGGAACGGGGCTCGTGAAAGCTTTACAAAGGGACTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCACGGCTACAGCAAAGGCGCCGGCTTGGGGGCCGAAATCATCGGTACCTTCATCTTGGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGAAACGCCAGAGACTCCCATGTTCCTATATTGGCTCCGCTATCGATTGGGTTTGCCGTGTTCATGGTTCACTTAGCCACCATTCCCATTACCGGCACCAGCATCAACCCGGCTAGAAGCTTCGGCCCCGCTGTCATCTTGAACCGGGAAAAGCCCTGGGACGATCATTGGATGTTCTGGGTTGGGCCTTTCATCGGAGCCGCCATTGCAGCGCTCTACCACCAGTTCGTTTTGCGGGCCGGCGCGGGCTCTCTTAGGAGCCACCCGTCCCCCCGTCGGTTCCACGACTTTTCTTGTTTCCTCCCTCCCACCGCCGGCAACCCTCCACATCGTTCTTCACTTAAATCGAGAGGCAAAGATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAA | 1071 | 56.21 | MAKDDLTARAFSGKDYQDPPPAPLIDAAEVGKWSFFRALIAEFVATLLFLYITILIIIGHSSQSDPHKLGGNACGGVGILGIAWGFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMIAQCLGAICGTGLVKALQRDYFNKYGGGANQLAHGYSKGAGLGAEIIGTFILVYTVFSATDAKRNARDSHVPILAPLSIGFAVFMVHLATIPITGTSINPARSFGPAVILNREKPWDDHWMFWVGPFIGAAIAALYHQFVLRAGAGSLRSHPSPRRFHDFSCFLPPTAGNPPHRSSLKSRGKDASVAIDEDQRLFQECLYPKAGMEHPQNENPEAPAAAIFEQTELVG | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7695873 | 7699979 | - | CmaCh18G008910.1 | Cma18g00891 | 314229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00891 | 356 | Gene3D | Glycerol uptake facilitator protein. | 22 | 279 | IPR023271 | - | |
Cma18g00891 | 356 | Pfam | Major intrinsic protein | 31 | 265 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | CDD | MIP | 37 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | TIGRFAM | MIP: MIP family channel proteins | 41 | 265 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | PANTHER | AQUAPORIN PIP2-4-RELATED | 9 | 273 | - | - | |
Cma18g00891 | 356 | PRINTS | Major intrinsic protein family signature | 248 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | PRINTS | Major intrinsic protein family signature | 123 | 142 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | PRINTS | Major intrinsic protein family signature | 172 | 190 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | PRINTS | Major intrinsic protein family signature | 37 | 56 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | PRINTS | Major intrinsic protein family signature | 86 | 110 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | PRINTS | Major intrinsic protein family signature | 208 | 230 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma18g00891 | 356 | SUPERFAMILY | Aquaporin-like | 30 | 272 | IPR023271 | - | |
Cma18g00891 | 356 | ProSitePatterns | MIP family signature. | 104 | 112 | IPR022357 | - | |
Cma18g00891 | 356 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 9 | 273 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma18g00891 | Cma-Chr18:7695873 | Cma03g01241 | Cma-Chr3:8206142 | 8.98E-150 | dispersed | |
Cma18g00891 | Cma-Chr18:7695873 | Cma03g01240 | Cma-Chr3:8202908 | 2.41E-159 | wgd | |
Cma18g00891 | Cma-Chr18:7695873 | Cma04g01369 | Cma-Chr4:7014589 | 3.54E-173 | wgd | |
Cma18g00891 | Cma-Chr18:7695873 | Cma04g02577 | Cma-Chr4:17684866 | 1.99E-152 | wgd | |
Cma18g00891 | Cma-Chr18:7695873 | Cma07g00928 | Cma-Chr7:4452094 | 2.56E-155 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00891 | K09872 | - | csv:101204956 | 496.508 |