Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00891 ATGGCGAAAGACGACTTGACGGCGCGGGCGTTCTCCGGCAAGGACTACCAGGACCCTCCTCCTGCGCCGCTGATCGACGCGGCGGAGGTAGGGAAGTGGTCCTTTTTCAGAGCCCTGATTGCTGAGTTTGTCGCCACTCTCCTGTTTCTGTATATCACCATCTTGATTATTATTGGCCATAGTAGCCAGTCCGACCCCCACAAACTTGGCGGCAACGCTTGCGGCGGCGTTGGCATCCTCGGTATCGCTTGGGGCTTTGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATTTCAGGCGGGCACATCAACCCGGCGGTGACATTCGGGCTATTCTTAGCCCGGAAAGTGTCGCTGGTTCGAGCAGTGGCGTACATGATAGCTCAGTGCTTGGGAGCCATATGCGGAACGGGGCTCGTGAAAGCTTTACAAAGGGACTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCACGGCTACAGCAAAGGCGCCGGCTTGGGGGCCGAAATCATCGGTACCTTCATCTTGGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGAAACGCCAGAGACTCCCATGTTCCTATATTGGCTCCGCTATCGATTGGGTTTGCCGTGTTCATGGTTCACTTAGCCACCATTCCCATTACCGGCACCAGCATCAACCCGGCTAGAAGCTTCGGCCCCGCTGTCATCTTGAACCGGGAAAAGCCCTGGGACGATCATTGGATGTTCTGGGTTGGGCCTTTCATCGGAGCCGCCATTGCAGCGCTCTACCACCAGTTCGTTTTGCGGGCCGGCGCGGGCTCTCTTAGGAGCCACCCGTCCCCCCGTCGGTTCCACGACTTTTCTTGTTTCCTCCCTCCCACCGCCGGCAACCCTCCACATCGTTCTTCACTTAAATCGAGAGGCAAAGATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAA 1071 56.21 MAKDDLTARAFSGKDYQDPPPAPLIDAAEVGKWSFFRALIAEFVATLLFLYITILIIIGHSSQSDPHKLGGNACGGVGILGIAWGFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMIAQCLGAICGTGLVKALQRDYFNKYGGGANQLAHGYSKGAGLGAEIIGTFILVYTVFSATDAKRNARDSHVPILAPLSIGFAVFMVHLATIPITGTSINPARSFGPAVILNREKPWDDHWMFWVGPFIGAAIAALYHQFVLRAGAGSLRSHPSPRRFHDFSCFLPPTAGNPPHRSSLKSRGKDASVAIDEDQRLFQECLYPKAGMEHPQNENPEAPAAAIFEQTELVG 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7695873 7699979 - CmaCh18G008910.1 Cma18g00891 314229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00891 356 Gene3D Glycerol uptake facilitator protein. 22 279 IPR023271 -
Cma18g00891 356 Pfam Major intrinsic protein 31 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 CDD MIP 37 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 TIGRFAM MIP: MIP family channel proteins 41 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 PANTHER AQUAPORIN PIP2-4-RELATED 9 273 - -
Cma18g00891 356 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00891 356 SUPERFAMILY Aquaporin-like 30 272 IPR023271 -
Cma18g00891 356 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Cma18g00891 356 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 273 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00891 Cma-Chr18:7695873 Cma03g01241 Cma-Chr3:8206142 8.98E-150 dispersed
Cma18g00891 Cma-Chr18:7695873 Cma03g01240 Cma-Chr3:8202908 2.41E-159 wgd
Cma18g00891 Cma-Chr18:7695873 Cma04g01369 Cma-Chr4:7014589 3.54E-173 wgd
Cma18g00891 Cma-Chr18:7695873 Cma04g02577 Cma-Chr4:17684866 1.99E-152 wgd
Cma18g00891 Cma-Chr18:7695873 Cma07g00928 Cma-Chr7:4452094 2.56E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00891 K09872 - csv:101204956 496.508