Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00896 ATGGCGCTCAATCACCAAAACGGCACCACCGCCGCCGCCGCATTCAGCCTTTGTACCACCAACGGCGACTTTTATTCCGACCCGTTAAACTGGGGTGCGGCGGCGGAGGCGATGAAAGGAAGCCATTTAGATGAGGTGACGAAGATGGTGGAGGAGTATCGAAACCCGGTAGTCCGGCTTGGTGGTGAGAGCTTGACTATTGCTCAAGTTGCCGCCATTGCCAACGTCGCCGGCGGGAATGTCACGGTGGCGCTGGCGGAGGAGAGCCGTGCCCGGGTGAAGGCCAGCAGCGATTGGGTGATGGAGAGTATGAATAAAGGAACCGATAGCTATGGTGTCACCACCGGTTTCGGTGCAACCTCCCATCGGAGAACTCGACAGGGCGGAGCTCTTCAAAGAGAACTTATTAGGTTTTTGAATGCGGGAATCTTGGGCAGCGACACGGAATCTTCTCATAAACTACCACCAACAACGACTAGAGCTGCCATGTTAGTAAGAATCAACACGCTTCTACAAGGCTACTCGGGCATTCGATTCGAAGTCTTGGAAGCCATAGCCAAGCTTCTAAACCACAACATTACTCCATGTTTACCACTAAGAGGAACCATAACAGCCTCAGGCGATCTAGTTCCTCTGTCTTACATAGCTGCCCTCTTAATCGGAAGACCAAATTCCAAAGCTGTTGGACCTTCCGGCGAGCTCATTAATCCATCCAAAGCCTTCGAGCTAGCCGGAATCCATGGTGGGTTCTTCGAATTACAGCCTAAAGAAGGCCTCGCGCTTGTAAATGGCACCGCCGTCGGGTCTGGCTTGGCGTCCATGGTGCTTTTCGAAGCCAACATTTTGGCTGTTTTGTCTGTCGTCTTGTCGGCTGTCTTCGCTGAAGTTATGCAAGGAAAGCCCGAATTCACCGACCATTTAACGCATAAATTGAAACATCATCCAGGACAAATCGAAGCGGCGGCGGTAATGGAACATATATTATCCGGCAGCTCTTACGTAAAATCAGCTCAAAAACAGCACGAAATCGACCCATTACAGAAGCCAAAACAAGACAGATATGCATTAAGAACATCCCCACAATGGCTCGGGCCACAAATTGAGGTCATCCGAGCTGCAACGAAGATGATCGAGAGAGAAATAAACTCAGTAAACGACAACCCATTAATCGATGTGTCAAGAAACAGAGCATTACATGGAGGGAATTTCCAAGGGACACCCATTGGAGTATCAATGGACAACACAAGATTAGCACTAGCTTCAATTGGCAAGCTCATGTTTGCTCAATTCTCAGAGCTGGTAAACGATTTCTACAACAATGGGTTGCCTTCAAATCTCTCAGCAAGTCGTAATCCCAGCTTGGATTATGGGTTCAAAGGAGCTGAAATCGCCATGGCATCGTATTGCTCTGAGCTTCAATTCTTAGCTAACCCTGTCACCAACCATGTCCAAAGCGCCGAGCAACACAACCAAGATGTGAACTCATTGGGATTGATATCATCGAGGAAAACAGAGGAGGCGGTGGAGATATTGAAGCTGATGTCCACTACTTTCTTGGTGGCCCTTTGCCAAGCTATTGATTTGAGACACTTGGAGGAGAATTTGAAGAACACAGTGAAGAACACAATCAGTCAAGTAGTGAAGAAAGTTCTAATCAATAAGTATAATGGGGAGCTTCATCCGATTCGATTCAGTGAAAAACATTTGCTTCAAGTGGTTGATCGAGAACAGATATTCAGTTATATTGATGATCCTTGCAGTGGTACATACCCATTAATGGAGAAGCTAAGACAAGTTCTTGTGGATCAAGCTCTGAGAAATGGGGAGAAAGAACAAGCTATGAACACTTCGATTTTTCATAAGATCGGAGAATTTGAGGAAGAACTAAGAACACTACTGCCAAAAGAGGTAGAACATACAAGAATTCAATTTGAAAACGAAAACTCGACGATTCCGAATCAAATCAAGGAATGTAGATCATACCCATTGTATAAGTTTGTGAGAGAAGGATTGGGGACGAGTTTATTAACAGGGGAAGAAATCAAATCTCCTGGAGAAGAATTTGATAAGGTGTTCTTAGCTATTTCAGGTGGGAAGTTGATTGATCCGATGTTGGAGTGTTTGAAAGGGTGGAATGGTGTTCCTCTACCGATCAACTAG 2160 46.2 MALNHQNGTTAAAAFSLCTTNGDFYSDPLNWGAAAEAMKGSHLDEVTKMVEEYRNPVVRLGGESLTIAQVAAIANVAGGNVTVALAEESRARVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTRQGGALQRELIRFLNAGILGSDTESSHKLPPTTTRAAMLVRINTLLQGYSGIRFEVLEAIAKLLNHNITPCLPLRGTITASGDLVPLSYIAALLIGRPNSKAVGPSGELINPSKAFELAGIHGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSVVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILSGSSYVKSAQKQHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNRALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTFLVALCQAIDLRHLEENLKNTVKNTISQVVKKVLINKYNGELHPIRFSEKHLLQVVDREQIFSYIDDPCSGTYPLMEKLRQVLVDQALRNGEKEQAMNTSIFHKIGEFEEELRTLLPKEVEHTRIQFENENSTIPNQIKECRSYPLYKFVREGLGTSLLTGEEIKSPGEEFDKVFLAISGGKLIDPMLECLKGWNGVPLPIN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7744795 7748227 + CmaCh18G008960.1 Cma18g00896 314234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00896 719 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 27 709 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cma18g00896 719 Gene3D Fumarase/aspartase (Central domain) 266 713 - -
Cma18g00896 719 SUPERFAMILY L-aspartase-like 27 718 IPR008948 GO:0003824
Cma18g00896 719 CDD PAL-HAL 63 529 IPR001106 -
Cma18g00896 719 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 718 - -
Cma18g00896 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841
Cma18g00896 719 Pfam Aromatic amino acid lyase 65 540 IPR001106 -
Cma18g00896 719 PANTHER HISTIDINE AMMONIA-LYASE 19 718 IPR001106 -
Cma18g00896 719 Gene3D - 532 653 IPR023144 -
Cma18g00896 719 Gene3D - 19 265 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00896 Cma-Chr18:7744795 Cma03g01230 Cma-Chr3:8140438 0 dispersed
Cma18g00896 Cma-Chr18:7744795 Cma03g01229 Cma-Chr3:8135610 0 wgd
Cma18g00896 Cma-Chr18:7744795 Cma07g00912 Cma-Chr7:4328216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00896 K10775 - qsu:112009271 1135.94