Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00906 ATGGAGTTTTCCACGCGCCCCTGGATTCGAGGGCGATTCTTAACCATTTTGCAGGAAATCGAGATGGGTCCATCGGGGAAGGACCTGAAAGACATGGTGGTGAGTCAACTGGGGGAGTCTTTGAGGGAGATTTCGGGGCTTCCTGAGTATAACGGCATATGCAAGAAGGTGTATGGGGATTTGATTCGAAGAGTGAAGCTGTTAAGCCCTTTGTTTGAGGAATTGAGAGATGGAGATGAAGAACTTGAATTAGATGTTCTTAAGGGTTTGGAGTTGCTGAAAATTGCTTTGGATTCTGCTGCAGAGTTTCTTAGATCGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGAAATTAGAGAAATTAGTACTTGAGTTTCATCATATGACTGAAGATATTGAAGCAGCACTTAGCAAGCTTCCCATCGACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACCGAACTTGTTCATGCGCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGCTGATGCAGAGTTAGGCAAGGATTTGGTCATGTTAGAGGAAGAAAAAGATCCTGACCCTGCGATATTGAGAAGAGTTTCTGAAAAACTGCATCTTCGGAGTATAAACGATCTGAAGAAAGAGTCGTTAGCTATCCATGAGCTGGTGATCTCGATCGATGGAGGAGACCCGGGGGATGTTTTTGGTAAACTGTCGTCCGTTTTAAAGAAGTTGAAGGATTATGTACAATCAGAAAACCCCGAAGTTGAAACTTCTCAAGATGAAAAAAGTACGACTATTAAACACAGATCTCCTGTCATCCCCGACGATTTCAGGTGCCCCATATCTCTTGAATTAATGAGGGATCCCGTCATTGTCTCGACTGGGCAGACGTACGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACGCAGCAAGCTTTACAACATACAGCCTTAACACCAAATTACGTCTTGAAGAGCCTGATTTCTTTGTGGTGTGAGAACAATGGCGTTGAACTGCCTAGGAAGCAAGGTAACTGCAGAAGCAAGAAACCCGGAAGCAGTATTTCAGACTGCGATCGGGCTACTATCGACGCATTACTGCTAAAACTGGTTAATGGATCTCCAGAACAGAAAAGATCAGCTGCTGGTGAGCTCCGACTACTAGCGAAGAGGAATTCCGATAACAGAATTTGTATCGCCGAGGCGGGAGCCATTCCGTTCCTCGTCGAACTATTATCTTCAAACGATACTAGGACTCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCGATCAACGACAGTAACAAAAGAACGATTGTTGATCTCCGAGCCATTCCTGCTATTGTTGAAGTACTGAAAAATGGCAGCATGGAAGCAAGGGAAAATGCAGCTGCGACCCTTTTCAGCTTATCCGTGATAGACGAGAACAAGGTCGCCATCGGAGTAGCTGGGGCGATTCCTGCTCTCATAAGCTTGCTTTGTGAAGGTACTCCCAGAGGAAAGAAGGACGCTGCCACTGCTATCTTCAATCTTTCAATCTATCAGGGAAACAAAGCAAGGGCTCTAAGAGCAGGCATTGTGAGTCCACTCATGGGATTTCTGAAAGATACTGGAGGTGGCATGGTGGATGAAGCTCTAGCTATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGGTAGCAATAGGGCAAGCCGAGCCGATGGCGGTTCTATTAGAGTTCATCAAAACTGGTTCGCCACGGAACCGGGAAAACGCTGCAGCCGTGCTGTGGTCACTTTGCAGTACCGATTTCGAGCAGTTGAAGCTAGCTAGGGAGCATGGTGCAGAAGAGGCACTGAAAGAAGTATCTGAGAATGGCACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTTCACCCTTGTAG 1959 46.2 MEFSTRPWIRGRFLTILQEIEMGPSGKDLKDMVVSQLGESLREISGLPEYNGICKKVYGDLIRRVKLLSPLFEELRDGDEELELDVLKGLELLKIALDSAAEFLRSVSRGSKLFQASKLEKLVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVGSADAELGKDLVMLEEEKDPDPAILRRVSEKLHLRSINDLKKESLAIHELVISIDGGDPGDVFGKLSSVLKKLKDYVQSENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALQHTALTPNYVLKSLISLWCENNGVELPRKQGNCRSKKPGSSISDCDRATIDALLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGVAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARALRAGIVSPLMGFLKDTGGGMVDEALAILAILATHHEGKVAIGQAEPMAVLLEFIKTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSSPL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7786736 7789604 + CmaCh18G009060.1 Cma18g00906 314244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00906 652 Pfam Armadillo/beta-catenin-like repeat 439 478 IPR000225 GO:0005515
Cma18g00906 652 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Cma18g00906 652 Pfam Armadillo/beta-catenin-like repeat 481 519 IPR000225 GO:0005515
Cma18g00906 652 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Cma18g00906 652 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Cma18g00906 652 SUPERFAMILY ARM repeat 368 642 IPR016024 -
Cma18g00906 652 Gene3D - 364 442 IPR011989 -
Cma18g00906 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Cma18g00906 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 344 IPR013083 -
Cma18g00906 652 SUPERFAMILY RING/U-box 268 345 - -
Cma18g00906 652 CDD RING-Ubox_PUB 275 317 IPR045210 -
Cma18g00906 652 Gene3D - 443 545 IPR011989 -
Cma18g00906 652 PANTHER U BOX DOMAIN-CONTAINING 33 645 - -
Cma18g00906 652 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 33 645 - -
Cma18g00906 652 Gene3D - 33 143 IPR036537 GO:0007166
Cma18g00906 652 Gene3D - 546 648 IPR011989 -
Cma18g00906 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Cma18g00906 652 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Cma18g00906 652 SMART arm_5 480 520 IPR000225 GO:0005515
Cma18g00906 652 SMART arm_5 521 561 IPR000225 GO:0005515
Cma18g00906 652 SMART arm_5 398 438 IPR000225 GO:0005515
Cma18g00906 652 SMART arm_5 439 479 IPR000225 GO:0005515
Cma18g00906 652 SMART arm_5 562 602 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01383 Cma18g00906 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00596 Cma-Chr1:3130763 Cma18g00906 Cma-Chr18:7786736 0 dispersed
Cma02g00810 Cma-Chr2:4791084 Cma18g00906 Cma-Chr18:7786736 1.22E-10 dispersed
Cma02g01665 Cma-Chr2:9410473 Cma18g00906 Cma-Chr18:7786736 5.00E-94 dispersed
Cma13g00132 Cma-Chr13:899216 Cma18g00906 Cma-Chr18:7786736 0 dispersed
Cma15g00946 Cma-Chr15:5061115 Cma18g00906 Cma-Chr18:7786736 2.82E-130 dispersed
Cma18g00146 Cma-Chr18:754216 Cma18g00906 Cma-Chr18:7786736 4.56E-32 dispersed
Cma18g00906 Cma-Chr18:7786736 Cma20g00410 Cma-Chr20:1964270 0 dispersed
Cma19g00177 Cma-Chr19:1168183 Cma18g00906 Cma-Chr18:7786736 3.88E-90 dispersed
Cma20g00982 Cma-Chr20:5237544 Cma18g00906 Cma-Chr18:7786736 1.32E-27 dispersed
Cma18g00906 Cma-Chr18:7786736 Cma04g01383 Cma-Chr4:7077270 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00906 - - csv:101221065 1055.05