Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00911 ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGTTTGTTCTTTCTTGTCGCCTTGGCTTCTTTCAATCTCACATTGCCCCACCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCGATATCGAGAAGAAAAGCGCTATCCATCGAATCAAAGGATCAAGCCTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGTTGCGACCCAAATTGGGCGGCGAACCGGCAGAGACTCGCCGACTGCGGCATCGGATTTGGCCGCGACGCCATGGGTGGCAAAGGCGGCAAGATCTACATCGTCACCGACTCCTCAGATTCCAACCCGGAAAACCCAACTCCGGGAACCCTCCGCCACGCCGTGATCCAATTCGAACCACTCTGGATCATCTTCTCCGCCGACATGACAATCAAACTCAAATATGAACTTATCATCAACAGCTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGTGGTTGTATCACTATCCAATACGTGTCCAACATCATCATCCACAACATCCACGTGCATCACTGTGTACCCTCTGGCAATGCCAACATAAGATCAACCCCGACCCACGTCGGGCACCGAGGGCTATCGGACGGGGACGGGATCTCGATATTCAGCTCAAGAAAGATTTGGATAGACCATTGCTCGCTTTCATACTGCACCGACGGGCTAATAGACGCAATAATGGGATCGACAGGGATAACAATATCGAACAGCTATTTTTCGCACCACGACGAGGTGATGCTGCTGGGACACGACGACCGGTACGTGCAGGACTCGGGAATGCAAGTGACCATAGCGTTCAACCACTTCGGTGAGGCTCTGGTGCAGCGCATGCCGAGGTGCAGACATGGCTACATTCATGTGGTCAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGTGCTCGCCCCACTATTAACAGCCAGGGTAACCGTTATGTGGCTCCTGTCAACCCCAATGCTAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAATGGACGGCGTGGAATTGGCGGACGGACGGTGATATTTTGGTGAATGGCGCTTTTTTTGTGCCGTCCGGTGCCGGACTTAGCACCCAGTACGGTAAAGCCTCCAGTACTGAGCCTAAGTCGGTGGCTCTTATCAATCAGCTCACTATGAACGCTGGCGTTTTGGGTGCCCCAAGGTTTAGTAATGGTGAAGGGATTGTATATCCAGGATTTAGCGGCAGCAATGGCGGCGGTAATGGCGGATATGGCGGCGGCACTGTCATTAATAATAGCCCGATGTATGGAAATAGCGGTGGTGGTGAGGATGACTTTTACGGAATGATATTTAAAGGCGACGGTAATAGAGTATCGCCGCCGTGGTCGCCGCCGATGTTCTTATGTGTGCAAATTTTAGTAGGTTTGTATATAGTCACAAATAATAGTGGTTTATTGACGTTATAG 1509 51.36 MFPVLSILLIWMSGLFFLVALASFNLTLPHQHPDPDSVADELQRTVNASISRRKALSIESKDQAFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSNPENPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCVPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYVAPVNPNAKEVTRRLDAAETEWTAWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSTEPKSVALINQLTMNAGVLGAPRFSNGEGIVYPGFSGSNGGGNGGYGGGTVINNSPMYGNSGGGEDDFYGMIFKGDGNRVSPPWSPPMFLCVQILVGLYIVTNNSGLLTL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7813567 7818379 - CmaCh18G009110.1 Cma18g00911 314249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00911 502 SMART amb_all 145 342 IPR002022 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Cma18g00911 502 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Cma18g00911 502 Pfam Pectate lyase 153 333 IPR002022 -
Cma18g00911 502 PANTHER PECTATE LYASE 10 429 - -
Cma18g00911 502 Gene3D - 70 412 IPR012334 -
Cma18g00911 502 SUPERFAMILY Pectin lyase-like 61 390 IPR011050 -
Cma18g00911 502 PANTHER PECTATE LYASE 18-RELATED 10 429 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00500 Cma-Chr15:2246288 Cma18g00911 Cma-Chr18:7813567 0 dispersed
Cma18g00911 Cma-Chr18:7813567 Cma08g01035 Cma-Chr8:6481057 0 dispersed
Cma18g00911 Cma-Chr18:7813567 Cma03g01203 Cma-Chr3:8019595 0 wgd
Cma18g00911 Cma-Chr18:7813567 Cma04g01392 Cma-Chr4:7107387 0 wgd
Cma18g00911 Cma-Chr18:7813567 Cma04g02549 Cma-Chr4:17458857 0 wgd
Cma18g00911 Cma-Chr18:7813567 Cma07g00892 Cma-Chr7:4221789 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00911 K01728 - csv:101205739 869.766