Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00911 | ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGTTTGTTCTTTCTTGTCGCCTTGGCTTCTTTCAATCTCACATTGCCCCACCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCGATATCGAGAAGAAAAGCGCTATCCATCGAATCAAAGGATCAAGCCTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGTTGCGACCCAAATTGGGCGGCGAACCGGCAGAGACTCGCCGACTGCGGCATCGGATTTGGCCGCGACGCCATGGGTGGCAAAGGCGGCAAGATCTACATCGTCACCGACTCCTCAGATTCCAACCCGGAAAACCCAACTCCGGGAACCCTCCGCCACGCCGTGATCCAATTCGAACCACTCTGGATCATCTTCTCCGCCGACATGACAATCAAACTCAAATATGAACTTATCATCAACAGCTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGTGGTTGTATCACTATCCAATACGTGTCCAACATCATCATCCACAACATCCACGTGCATCACTGTGTACCCTCTGGCAATGCCAACATAAGATCAACCCCGACCCACGTCGGGCACCGAGGGCTATCGGACGGGGACGGGATCTCGATATTCAGCTCAAGAAAGATTTGGATAGACCATTGCTCGCTTTCATACTGCACCGACGGGCTAATAGACGCAATAATGGGATCGACAGGGATAACAATATCGAACAGCTATTTTTCGCACCACGACGAGGTGATGCTGCTGGGACACGACGACCGGTACGTGCAGGACTCGGGAATGCAAGTGACCATAGCGTTCAACCACTTCGGTGAGGCTCTGGTGCAGCGCATGCCGAGGTGCAGACATGGCTACATTCATGTGGTCAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGTGCTCGCCCCACTATTAACAGCCAGGGTAACCGTTATGTGGCTCCTGTCAACCCCAATGCTAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAATGGACGGCGTGGAATTGGCGGACGGACGGTGATATTTTGGTGAATGGCGCTTTTTTTGTGCCGTCCGGTGCCGGACTTAGCACCCAGTACGGTAAAGCCTCCAGTACTGAGCCTAAGTCGGTGGCTCTTATCAATCAGCTCACTATGAACGCTGGCGTTTTGGGTGCCCCAAGGTTTAGTAATGGTGAAGGGATTGTATATCCAGGATTTAGCGGCAGCAATGGCGGCGGTAATGGCGGATATGGCGGCGGCACTGTCATTAATAATAGCCCGATGTATGGAAATAGCGGTGGTGGTGAGGATGACTTTTACGGAATGATATTTAAAGGCGACGGTAATAGAGTATCGCCGCCGTGGTCGCCGCCGATGTTCTTATGTGTGCAAATTTTAGTAGGTTTGTATATAGTCACAAATAATAGTGGTTTATTGACGTTATAG | 1509 | 51.36 | MFPVLSILLIWMSGLFFLVALASFNLTLPHQHPDPDSVADELQRTVNASISRRKALSIESKDQAFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSNPENPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCVPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYVAPVNPNAKEVTRRLDAAETEWTAWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSTEPKSVALINQLTMNAGVLGAPRFSNGEGIVYPGFSGSNGGGNGGYGGGTVINNSPMYGNSGGGEDDFYGMIFKGDGNRVSPPWSPPMFLCVQILVGLYIVTNNSGLLTL | 502 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7813567 | 7818379 | - | CmaCh18G009110.1 | Cma18g00911 | 314249 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00911 | 502 | SMART | amb_all | 145 | 342 | IPR002022 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 93 | 110 | IPR018082 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 117 | 142 | IPR018082 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 153 | 169 | IPR018082 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 217 | 238 | IPR018082 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 297 | 316 | IPR018082 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 361 | 385 | IPR018082 | - | |
Cma18g00911 | 502 | PRINTS | Pollen allergen Amb family signature | 390 | 413 | IPR018082 | - | |
Cma18g00911 | 502 | Pfam | Pectate lyase | 153 | 333 | IPR002022 | - | |
Cma18g00911 | 502 | PANTHER | PECTATE LYASE | 10 | 429 | - | - | |
Cma18g00911 | 502 | Gene3D | - | 70 | 412 | IPR012334 | - | |
Cma18g00911 | 502 | SUPERFAMILY | Pectin lyase-like | 61 | 390 | IPR011050 | - | |
Cma18g00911 | 502 | PANTHER | PECTATE LYASE 18-RELATED | 10 | 429 | IPR045032 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g00500 | Cma-Chr15:2246288 | Cma18g00911 | Cma-Chr18:7813567 | 0 | dispersed | |
Cma18g00911 | Cma-Chr18:7813567 | Cma08g01035 | Cma-Chr8:6481057 | 0 | dispersed | |
Cma18g00911 | Cma-Chr18:7813567 | Cma03g01203 | Cma-Chr3:8019595 | 0 | wgd | |
Cma18g00911 | Cma-Chr18:7813567 | Cma04g01392 | Cma-Chr4:7107387 | 0 | wgd | |
Cma18g00911 | Cma-Chr18:7813567 | Cma04g02549 | Cma-Chr4:17458857 | 0 | wgd | |
Cma18g00911 | Cma-Chr18:7813567 | Cma07g00892 | Cma-Chr7:4221789 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00911 | K01728 | - | csv:101205739 | 869.766 |