Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00928 ATGTTGGCAATGGAGAAGGATTTTGATGCTAAGTTGATGATTCAGAATCAGGGGAACGCTTCTAATGGCGGCGGCAATGTTCAGAGATCCAATAGCTTTGCGTTTCGTGCTCCTCAGGAGAATTTTACTATACAGGATTTTGAATTGGGGAAGATTTATGGCGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTGTATGCATTGAAGATAATGGACAAGAAATTCATTACCAAAGAAAACAAAACTGCTTATGTGAAGTTGGAAAGGATTGTACTTGATCAATTGGACCATCCTGGTGTTGTCAGGCTATTTTTTACCTTTCAAGATACTTTTTCTTTGTACATGGCATTGGAGTCGTGTGAAGGTGGAGAGCTTTTTGATCAGATAAATAGGAAAGGTCGTCTATCGGAGGAGGAAGCTCGGTTTTATGCCGCAGAAGTCATCGACGCTCTTGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAGAACTTGCTGCTTACTACTAATGGACATATCAAAATAGCTGATTTCGGTAGCGTAAAGCCTATGGTAGACAGTCGAATCACCGTGCTTCCGAATGCAGCATCGGATGACAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTTCTTAATTCCTCCCCTGCAACTTTCGGAAACGACCTTTGGGCGCTCGGGTGCTCCGTGTACCAAATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTTCAAAAAATTGTAGCACGAGATATAAAATTCCCCAGTTATTTTTCCGAGCAAGCCCGGGATCTCATCGACCACCTATTGGATTTAGATCCCGTTAAGAGACCGGGTGCCGGAGCTGATGGCTATGCTTCTCTTAAAAGTCATCCCTTCTTTGAGGGGGTTGATTGGAAGAACATAAGAGCACAAACTCCTCCCAGCCTTGCTTTAGAAGCAGTGTCTCGCTCAAACGAGAACGACGACAGCTCCGAGTCCTCTTGGAATCCTTCGCATATCGGAGACGGTGCACCGAGACAAAATGACGGGAATGCTGGTTCTGCATCGACTTCCGAAGGATCGAATCATATTGCTCGGATTGCATCGATAGACTCCTTCGATTCGAAATGGCAACAATTTCTTGAACCTGGAGAATCTGTTCTTATGATATCAATGGTGAAAAAGATTCAGAAAATCACAAGCAAAAAGGTTCAGCTCATCCTCACAAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTTAAGGGGAATATCATTTGGTCTAACAATCCTAATGACCTCAACATTCAAGTGATTAGTCCTTCACATTTCAAGATTTGCACGCCGAAAAAGATTGCCTCGTTTGAGGACGCGAAACAACGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1479 43.68 MLAMEKDFDAKLMIQNQGNASNGGGNVQRSNSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQINRKGRLSEEEARFYAAEVIDALEYIHNMGLIHRDIKPENLLLTTNGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCSVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPVKRPGAGADGYASLKSHPFFEGVDWKNIRAQTPPSLALEAVSRSNENDDSSESSWNPSHIGDGAPRQNDGNAGSASTSEGSNHIARIASIDSFDSKWQQFLEPGESVLMISMVKKIQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSNNPNDLNIQVISPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7955626 7961508 + CmaCh18G009280.1 Cma18g00928 314266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00928 492 MobiDBLite consensus disorder prediction 333 355 - -
Cma18g00928 492 SUPERFAMILY PH domain-like 308 491 - -
Cma18g00928 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 488 - -
Cma18g00928 492 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 21 488 - -
Cma18g00928 492 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
Cma18g00928 492 Gene3D Transferase(Phosphotransferase) domain 1 131 326 - -
Cma18g00928 492 Pfam Protein kinase domain 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00928 492 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00928 492 Coils Coil 472 492 - -
Cma18g00928 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cma18g00928 492 Pfam PH domain 389 491 IPR033931 -
Cma18g00928 492 SMART serkin_6 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00928 492 CDD STKc_PDK1 45 314 IPR039046 GO:0004674
Cma18g00928 492 Gene3D - 361 492 IPR011993 -
Cma18g00928 492 SUPERFAMILY Protein kinase-like (PK-like) 44 356 IPR011009 -
Cma18g00928 492 MobiDBLite consensus disorder prediction 333 374 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01407 Cma18g00928 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00928 Cma-Chr18:7955626 Cma11g00178 Cma-Chr11:931023 8.11E-61 dispersed
Cma18g00928 Cma-Chr18:7955626 Cma04g01407 Cma-Chr4:7195047 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69304 PF00069 Pkinase 8.90E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00928 K06276 - csv:101212874 899.427