Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00938 ATGCTTTCTTCCAATGTGGTCCAATATGAGAAAGTTGAGAAGATTGGAGAAGGAACGTATGGTGTGGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCTCTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTGCAAGATGTAGTGCATAGCGAGAAGCGCCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCACATGGACTCATCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGCCATTCTCATAGGGTTCTTCATCGAGATTTAAAACCCCAAAATCTACTCATAGATCGTCGCACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACGCTTTGGTACAGAGCACCAGAAATTTTACTTGGTTCCCGACATTACTCCACTCCTGTGGATGTTTGGTCGGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCACTATTCCCTGGGGACTCCGAGATTGATGAATTGTTTAAGATATTTAGGGGAGAGGGATTTTGGAATTTGAAAAACGAAGGCAACAAAAGTCAGTTCATCTGGCTACTGCGGCTTTGTGTTACATATATCTCACTTTATTCGCAATATGGGGAGTGTATAGTAGGACAGCACCTAAAACATTATTTCCCTTCTAAGTCTACGTCTGTCTGTACTAACATATTCATGCTTTCATCAAACCTCTGTGTGGGGATACAAAGAGTTCTGGGAACTCCAAATGAAGATTCATGGCCTGGCGTTACATCTTTGCCTGATTTCAAGTCTGCTTTCCCCAAGTGGCCTTCCAAGGACCTGGCTTCTGTAGTTCCAAATCTCGAATCTGCTGGCATTGATCTTCTCTCTGTAAGAAAGCTCCCGAAATTTGCTGATCTTTGTGCGATCGTCTTCCTCTCTGCACTGAGAAAATTGTTGCAACCTAGAATTCGATCAGATCCTTTAGGCGCTGTGATTGCTTCAAAGATGGGCACGTCTGAAGCTCTGCAGATCTTTTCAGGGGTTATACCTCGTGCTTTATGTTCAAAACCCTATTTGAACAATTTGGACTCCACATCTTTTAAATCACAAGTAAAATTGGTGGAAAAAGGAGTCCTGAGATATATGCATTTGTCGAAATGCTCAAGTAGGATATTACAAGAGCTAAAGACAGGCTTTAGTGGGAAAACAAAAGGTAATCGTCGTCTGTTATACAGATGCAAATGCCAACAAGCAGAAAGTGCTAGTGGTATGATTCCAGAAGGTGGAAATGGAGCATGGTTCAAGGATGGTGCAAATGTACCTCAGTCAATCACCAGCATTCAGAATGGATCAAATGCTTCGGAGTTTCAAGATGTTCAGTTTGCAAATCAGGAAATCAAGAACCCAATATCTAATGACAAAAATGAAGAAGTTAGAGATTCCTTTCATAAGATTAGTATTGAATCCATTGAGGATGAGGCATGGGACTTGCTTCGTGAATCCATTGTTTATTACTGTGGCAGTCCAGTTGGAACGATTGCAGCAAGGGACCCTACTTGTTCTAATTCACTGAATTATGATCAGGTCTTTATACGTGATTTTATACCTTCTGGTATAGCTTTTTTATTGAAGGGAGAGTATGATATTGTTCGCAATTTTATCCTCCACACGCTTCAGTTGCAGAGCTGGGAGAAAACTATGGACTGTCACAGTCCTGGTCAAGGATTAATGCCTGCTAGTTTCAAGGTCCGAATAGTTCCTCTAGATGGTGACGACTCTGCGACAGAAGAGGTTTTGGATCCAGACTTTGGGGAGGCAGCAATTGGCCGTGTTGCACCTGTCGACTCAGTTCAGGAGAGAGTTGATGTTCAAACTGGGATCAAAATGATCTTGAGGCTTTGCCTAGCTGATGGTTTTGACATGTTCCCTACTTTATTGGTAACTGACGGTTCTTGTATGATAGATCGGCGTATGGGAATTCATGGCCACCCTCTCGAAATCCAAGCACTTTTTTATTCAGCACTACTTTGTGCACGAGAGATGCTTGCTCCAGAAGATGGGTCAGCTGGTCTTCTCCGTGCGCTTAACAATCGTTTGGTGGCTCTATCGTTTCATATCAGAGAGTATTATTGGGTCGATTTGAGAAAGCTAAATGAAATTTATCGTTACACGACTGAAGAGTATTCATACGATGCAGTCAACAAATTCAACATCTACCCTGATCAAATTCCTTCTTGGTTGGTGGAATGGATCCCCAATATAGGAGGTTATCTACTTGGTAATCTTCAACCGGCTCACATGGATTTCCGGTTCTTTTCTCTAGGAAATTTGTGGTCCATAGTAAGTGGTCTTGCTACAATAGAACAGTCTCATTCCATTTTGGATCTCATTGAATCCAAATGGGAGGATTTGGTTGCAGACATGCCATTCAAGATTTGTTACCCTGCCCTTGAAGGTCGGGAATGGCAGATTATCACTGGCAGCGATCCCAAGAACACGCAATGGTCATACCATAATGCAGGCTCGTGGCCAACATTGCTGTGGCAGCTCACAGTTGCATGCATAAAGATGGATAGACCAGAAATTGCAGCACGAGCCATTGAGATCGCCGAGCGACGTCTGGCTAGAGATAAGTGGCCGGAATATTACGATACAAAAAAAGGAAGGTTCATTGGAAAACAAGCACGCCTATATCAAACATGGTCAATTGCAGGATACCTCGTGGGCAAGCTTCTGCTCGCCGAGCCAAGTAAGGCAAAAATTTTAATAACCGAAGAGGACTCGGATCTCATCAATGCCTTCTCCTGCATGATCAGTGCCAGCCCAAAAAGAAAGCGTGGTCAAAAGAACTTAAGTCCAAGTTACTTAGTTTAA 3006 42.95 MLSSNVVQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRGEGFWNLKNEGNKSQFIWLLRLCVTYISLYSQYGECIVGQHLKHYFPSKSTSVCTNIFMLSSNLCVGIQRVLGTPNEDSWPGVTSLPDFKSAFPKWPSKDLASVVPNLESAGIDLLSVRKLPKFADLCAIVFLSALRKLLQPRIRSDPLGAVIASKMGTSEALQIFSGVIPRALCSKPYLNNLDSTSFKSQVKLVEKGVLRYMHLSKCSSRILQELKTGFSGKTKGNRRLLYRCKCQQAESASGMIPEGGNGAWFKDGANVPQSITSIQNGSNASEFQDVQFANQEIKNPISNDKNEEVRDSFHKISIESIEDEAWDLLRESIVYYCGSPVGTIAARDPTCSNSLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRIVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSVQERVDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSAGLLRALNNRLVALSFHIREYYWVDLRKLNEIYRYTTEEYSYDAVNKFNIYPDQIPSWLVEWIPNIGGYLLGNLQPAHMDFRFFSLGNLWSIVSGLATIEQSHSILDLIESKWEDLVADMPFKICYPALEGREWQIITGSDPKNTQWSYHNAGSWPTLLWQLTVACIKMDRPEIAARAIEIAERRLARDKWPEYYDTKKGRFIGKQARLYQTWSIAGYLVGKLLLAEPSKAKILITEEDSDLINAFSCMISASPKRKRGQKNLSPSYLV 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8044895 8057211 + CmaCh18G009380.1 Cma18g00938 314276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00938 1001 ProSiteProfiles Protein kinase domain profile. 9 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00938 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cma18g00938 1001 SUPERFAMILY Six-hairpin glycosidases 533 961 IPR008928 GO:0005975
Cma18g00938 1001 Pfam Protein kinase domain 9 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00938 1001 SMART serkin_6 9 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00938 1001 Gene3D Phosphorylase Kinase; domain 1 6 89 - -
Cma18g00938 1001 Pfam Alkaline and neutral invertase 538 960 IPR024746 GO:0033926
Cma18g00938 1001 CDD STKc_CDK1_CdkB_like 9 340 - -
Cma18g00938 1001 Gene3D - 692 954 IPR012341 GO:0005975
Cma18g00938 1001 PANTHER ALKALINE/NEUTRAL INVERTASE E, CHLOROPLASTIC 383 1001 - -
Cma18g00938 1001 PANTHER - 383 1001 IPR024746 GO:0033926
Cma18g00938 1001 Gene3D Transferase(Phosphotransferase) domain 1 91 349 - -
Cma18g00938 1001 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cma18g00938 1001 SUPERFAMILY Protein kinase-like (PK-like) 8 248 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01185 Cma-Chr7:6510948 Cma18g00938 Cma-Chr18:8044895 1.79E-08 dispersed
Cma04g01423 Cma-Chr4:7270371 Cma18g00938 Cma-Chr18:8044895 0 transposed
Cma12g01016 Cma-Chr12:8077406 Cma18g00938 Cma-Chr18:8044895 0 transposed
Cma14g01577 Cma-Chr14:11860433 Cma18g00938 Cma-Chr18:8044895 0 transposed
Cma18g00938 Cma-Chr18:8044895 Cma04g01421 Cma-Chr4:7262456 3.47E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69305 PF12899 Glyco_hydro_100 9.10E-193 CL0059 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00938 - - csv:101217778 1052.74