Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00938 | ATGCTTTCTTCCAATGTGGTCCAATATGAGAAAGTTGAGAAGATTGGAGAAGGAACGTATGGTGTGGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCTCTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTGCAAGATGTAGTGCATAGCGAGAAGCGCCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCACATGGACTCATCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGCCATTCTCATAGGGTTCTTCATCGAGATTTAAAACCCCAAAATCTACTCATAGATCGTCGCACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACGCTTTGGTACAGAGCACCAGAAATTTTACTTGGTTCCCGACATTACTCCACTCCTGTGGATGTTTGGTCGGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCACTATTCCCTGGGGACTCCGAGATTGATGAATTGTTTAAGATATTTAGGGGAGAGGGATTTTGGAATTTGAAAAACGAAGGCAACAAAAGTCAGTTCATCTGGCTACTGCGGCTTTGTGTTACATATATCTCACTTTATTCGCAATATGGGGAGTGTATAGTAGGACAGCACCTAAAACATTATTTCCCTTCTAAGTCTACGTCTGTCTGTACTAACATATTCATGCTTTCATCAAACCTCTGTGTGGGGATACAAAGAGTTCTGGGAACTCCAAATGAAGATTCATGGCCTGGCGTTACATCTTTGCCTGATTTCAAGTCTGCTTTCCCCAAGTGGCCTTCCAAGGACCTGGCTTCTGTAGTTCCAAATCTCGAATCTGCTGGCATTGATCTTCTCTCTGTAAGAAAGCTCCCGAAATTTGCTGATCTTTGTGCGATCGTCTTCCTCTCTGCACTGAGAAAATTGTTGCAACCTAGAATTCGATCAGATCCTTTAGGCGCTGTGATTGCTTCAAAGATGGGCACGTCTGAAGCTCTGCAGATCTTTTCAGGGGTTATACCTCGTGCTTTATGTTCAAAACCCTATTTGAACAATTTGGACTCCACATCTTTTAAATCACAAGTAAAATTGGTGGAAAAAGGAGTCCTGAGATATATGCATTTGTCGAAATGCTCAAGTAGGATATTACAAGAGCTAAAGACAGGCTTTAGTGGGAAAACAAAAGGTAATCGTCGTCTGTTATACAGATGCAAATGCCAACAAGCAGAAAGTGCTAGTGGTATGATTCCAGAAGGTGGAAATGGAGCATGGTTCAAGGATGGTGCAAATGTACCTCAGTCAATCACCAGCATTCAGAATGGATCAAATGCTTCGGAGTTTCAAGATGTTCAGTTTGCAAATCAGGAAATCAAGAACCCAATATCTAATGACAAAAATGAAGAAGTTAGAGATTCCTTTCATAAGATTAGTATTGAATCCATTGAGGATGAGGCATGGGACTTGCTTCGTGAATCCATTGTTTATTACTGTGGCAGTCCAGTTGGAACGATTGCAGCAAGGGACCCTACTTGTTCTAATTCACTGAATTATGATCAGGTCTTTATACGTGATTTTATACCTTCTGGTATAGCTTTTTTATTGAAGGGAGAGTATGATATTGTTCGCAATTTTATCCTCCACACGCTTCAGTTGCAGAGCTGGGAGAAAACTATGGACTGTCACAGTCCTGGTCAAGGATTAATGCCTGCTAGTTTCAAGGTCCGAATAGTTCCTCTAGATGGTGACGACTCTGCGACAGAAGAGGTTTTGGATCCAGACTTTGGGGAGGCAGCAATTGGCCGTGTTGCACCTGTCGACTCAGTTCAGGAGAGAGTTGATGTTCAAACTGGGATCAAAATGATCTTGAGGCTTTGCCTAGCTGATGGTTTTGACATGTTCCCTACTTTATTGGTAACTGACGGTTCTTGTATGATAGATCGGCGTATGGGAATTCATGGCCACCCTCTCGAAATCCAAGCACTTTTTTATTCAGCACTACTTTGTGCACGAGAGATGCTTGCTCCAGAAGATGGGTCAGCTGGTCTTCTCCGTGCGCTTAACAATCGTTTGGTGGCTCTATCGTTTCATATCAGAGAGTATTATTGGGTCGATTTGAGAAAGCTAAATGAAATTTATCGTTACACGACTGAAGAGTATTCATACGATGCAGTCAACAAATTCAACATCTACCCTGATCAAATTCCTTCTTGGTTGGTGGAATGGATCCCCAATATAGGAGGTTATCTACTTGGTAATCTTCAACCGGCTCACATGGATTTCCGGTTCTTTTCTCTAGGAAATTTGTGGTCCATAGTAAGTGGTCTTGCTACAATAGAACAGTCTCATTCCATTTTGGATCTCATTGAATCCAAATGGGAGGATTTGGTTGCAGACATGCCATTCAAGATTTGTTACCCTGCCCTTGAAGGTCGGGAATGGCAGATTATCACTGGCAGCGATCCCAAGAACACGCAATGGTCATACCATAATGCAGGCTCGTGGCCAACATTGCTGTGGCAGCTCACAGTTGCATGCATAAAGATGGATAGACCAGAAATTGCAGCACGAGCCATTGAGATCGCCGAGCGACGTCTGGCTAGAGATAAGTGGCCGGAATATTACGATACAAAAAAAGGAAGGTTCATTGGAAAACAAGCACGCCTATATCAAACATGGTCAATTGCAGGATACCTCGTGGGCAAGCTTCTGCTCGCCGAGCCAAGTAAGGCAAAAATTTTAATAACCGAAGAGGACTCGGATCTCATCAATGCCTTCTCCTGCATGATCAGTGCCAGCCCAAAAAGAAAGCGTGGTCAAAAGAACTTAAGTCCAAGTTACTTAGTTTAA | 3006 | 42.95 | MLSSNVVQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRGEGFWNLKNEGNKSQFIWLLRLCVTYISLYSQYGECIVGQHLKHYFPSKSTSVCTNIFMLSSNLCVGIQRVLGTPNEDSWPGVTSLPDFKSAFPKWPSKDLASVVPNLESAGIDLLSVRKLPKFADLCAIVFLSALRKLLQPRIRSDPLGAVIASKMGTSEALQIFSGVIPRALCSKPYLNNLDSTSFKSQVKLVEKGVLRYMHLSKCSSRILQELKTGFSGKTKGNRRLLYRCKCQQAESASGMIPEGGNGAWFKDGANVPQSITSIQNGSNASEFQDVQFANQEIKNPISNDKNEEVRDSFHKISIESIEDEAWDLLRESIVYYCGSPVGTIAARDPTCSNSLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRIVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSVQERVDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSAGLLRALNNRLVALSFHIREYYWVDLRKLNEIYRYTTEEYSYDAVNKFNIYPDQIPSWLVEWIPNIGGYLLGNLQPAHMDFRFFSLGNLWSIVSGLATIEQSHSILDLIESKWEDLVADMPFKICYPALEGREWQIITGSDPKNTQWSYHNAGSWPTLLWQLTVACIKMDRPEIAARAIEIAERRLARDKWPEYYDTKKGRFIGKQARLYQTWSIAGYLVGKLLLAEPSKAKILITEEDSDLINAFSCMISASPKRKRGQKNLSPSYLV | 1001 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8044895 | 8057211 | + | CmaCh18G009380.1 | Cma18g00938 | 314276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00938 | 1001 | ProSiteProfiles | Protein kinase domain profile. | 9 | 386 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00938 | 1001 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 128 | 140 | IPR008271 | GO:0004672|GO:0006468 | |
Cma18g00938 | 1001 | SUPERFAMILY | Six-hairpin glycosidases | 533 | 961 | IPR008928 | GO:0005975 | |
Cma18g00938 | 1001 | Pfam | Protein kinase domain | 9 | 224 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00938 | 1001 | SMART | serkin_6 | 9 | 356 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00938 | 1001 | Gene3D | Phosphorylase Kinase; domain 1 | 6 | 89 | - | - | |
Cma18g00938 | 1001 | Pfam | Alkaline and neutral invertase | 538 | 960 | IPR024746 | GO:0033926 | |
Cma18g00938 | 1001 | CDD | STKc_CDK1_CdkB_like | 9 | 340 | - | - | |
Cma18g00938 | 1001 | Gene3D | - | 692 | 954 | IPR012341 | GO:0005975 | |
Cma18g00938 | 1001 | PANTHER | ALKALINE/NEUTRAL INVERTASE E, CHLOROPLASTIC | 383 | 1001 | - | - | |
Cma18g00938 | 1001 | PANTHER | - | 383 | 1001 | IPR024746 | GO:0033926 | |
Cma18g00938 | 1001 | Gene3D | Transferase(Phosphotransferase) domain 1 | 91 | 349 | - | - | |
Cma18g00938 | 1001 | ProSitePatterns | Protein kinases ATP-binding region signature. | 15 | 38 | IPR017441 | GO:0005524 | |
Cma18g00938 | 1001 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 248 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g01185 | Cma-Chr7:6510948 | Cma18g00938 | Cma-Chr18:8044895 | 1.79E-08 | dispersed | |
Cma04g01423 | Cma-Chr4:7270371 | Cma18g00938 | Cma-Chr18:8044895 | 0 | transposed | |
Cma12g01016 | Cma-Chr12:8077406 | Cma18g00938 | Cma-Chr18:8044895 | 0 | transposed | |
Cma14g01577 | Cma-Chr14:11860433 | Cma18g00938 | Cma-Chr18:8044895 | 0 | transposed | |
Cma18g00938 | Cma-Chr18:8044895 | Cma04g01421 | Cma-Chr4:7262456 | 3.47E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69305 | PF12899 | Glyco_hydro_100 | 9.10E-193 | CL0059 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00938 | - | - | csv:101217778 | 1052.74 |