Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00956 ATGGCCATAAGCCGATGTGTCGTCTTTAATCATTCACTTCTTCACTATCATCGTCGTCCTCCTCCACTTTTCTCAACTGCTCTGCGTTCGACCTCGTCATCCATGGAAGCTCCTCCCGAAGGTTACCGCAGAAACGTTGGCATTTGCCTCGTCAATTCTTCTAAGAAGATTTTTGCTGCCTCAAGGTTGGATATACCAGATGCTTGGCAAATGCCACAGGGTGGCGTGGATGAGGGTGAAGATCCAAGAAGTGCAGCCATCAGAGAACTTAGAGAAGAAACAGGAGTTAGATCCGCAGAGATTATTGCTGAAGTACCTTATTGGCTGACTTATGACTTCCCACCTCATGTCCGGGAAAAACTTCGACATCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAGAAGTGGTTTCTGCTGAAGTTGACTGGAAGTGACGAAGAGATCAATCTTTTAGGTGATGGGACTGAGAAACCCGAGTTCGGCGAATGGTCATGGATGTCACCTGAACAAGTAGTCGAACGTGCTGTAGATTTCAAGAAACCTGTTTACAAAGACGTTCTAACGGTATTCAAACCCCATCTCGAGTAA 588 46.94 MAISRCVVFNHSLLHYHRRPPPLFSTALRSTSSSMEAPPEGYRRNVGICLVNSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRHQWGSDWKGQAQKWFLLKLTGSDEEINLLGDGTEKPEFGEWSWMSPEQVVERAVDFKKPVYKDVLTVFKPHLE 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8145039 8148261 + CmaCh18G009560.1 Cma18g00956 314294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00956 195 PANTHER NUDIX HYDROLASE 26, CHLOROPLASTIC 19 194 - -
Cma18g00956 195 SUPERFAMILY Nudix 38 193 IPR015797 -
Cma18g00956 195 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 31 194 - -
Cma18g00956 195 Hamap RNA pyrophosphohydrolase [rppH]. 36 195 IPR022927 -
Cma18g00956 195 Pfam NUDIX domain 42 185 IPR000086 -
Cma18g00956 195 CDD Ap4A_hydrolase_plant_like 41 190 IPR022927 -
Cma18g00956 195 ProSitePatterns Nudix box signature. 74 95 IPR020084 GO:0016787
Cma18g00956 195 PRINTS NUDIX hydrolase family signature 69 83 IPR020476 -
Cma18g00956 195 PRINTS NUDIX hydrolase family signature 83 98 IPR020476 -
Cma18g00956 195 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 19 194 - -
Cma18g00956 195 ProSiteProfiles Nudix hydrolase domain profile. 41 188 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00956 - - - csv:101206740 374.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00521 Cma-Chr6:2432144 Cma18g00956 Cma-Chr18:8145039 1.94E-11 dispersed
Cma18g00956 Cma-Chr18:8145039 Cma04g00992 Cma-Chr4:5119035 5.95E-61 dispersed
Cma18g00956 Cma-Chr18:8145039 Cma14g00354 Cma-Chr14:1562470 8.97E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00956 Cma_Chr18 FPKM 14.538032 14.571095 33.463535 32.73381 19.64518 17.048336 18.577637 10.164089 10.79212 9.643373