Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00970 ATGAACTCAGTTCTCATTTTCCTTCTTCTTCTCTCTCTCCGCCGCGCCGGAGCTTTCGATTCTCCTCCACCACCACCACCATCAGCCGACCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCAATCCGATTCTCTCCCTCCGATCCCTACGGCTACGGGAAATTCTCCGTCAAGAACTGCCTCAAACAGGCGATCAAAATGTCGAGCGTAATCGGCGACTATCTCGATCGAGGAGGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGGAAGATTGCAGAGATCTTTCCGATTCCAATGTGGAGTTTCTCCGGTCGATTGAGAGCGTATTGGAGGCGGCGAAGGGCGTGGATGAGGAACTAGTGGAGCGCGTTCAGAGTATTTTGAGCGCGATCGTCACGAACGGCCAGACTTGTATAGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTAACGGCGCCGATGTCGAGCGCCGGGCAACTGTACAGTGTGTCGTTGGGATTGGTTACAAACTCGTTGTCGCGACTGTGGAAGAAGCGGCGGATGAAGGGAGACGGAGGGGATTCCGCGGCAGGCGCACGGAACAGAGAGCCTCTGAACACGCTGATCAAGGGACTACATAAAATGGGTTCATGCAACCAATCCACAGGCTGCTCAGGAAGGAAGCGTTTGTTGGCTGATTTAGGCACCACAGGAATCTTCATCAACGATACTGTGGTTGTTAGCTCTACTGGTGCAGACAACTTCACCTCAATTGGAGATGCTATTGCCTTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGAGGAGGATACTACGAAGAATACGTCGTCGTCCCCAAATACAAAACCAACATAATGCTCATTGGCGATGGCATTAACCGAACCGTCATCACTGGGAATCATAGCGTTGTCGATGGTTGGACGACTTATAATTCCTCTACATTTACTGTTTGTGGGGATAGATTTGTAGCAATAGATGTGACATTTAGGAACACAGCAGGGCCGGAGAAGCACCAAGCAGTAGCACTAAGGAGCAGTGCAGATCTCTCAACATTCTACCGCTGCAGCTTCGAGGGCTATCAAGATACTCTCTACGTCCATTCTCTAAGACAATTCTACCGAGAATGCGACATTTACGGCACAGTAGATTTCATATTTGGCAATGCCGCTGCAGTTTTCCAAAAATGCAATCTATACGCCAGAAAGCCACTCCCGAACCAAAAGATCGCCATCACGGCACAGGGCCGAACCGATCCAAACCAAAACACAGGTATCTCGATCCACGACTGCACTATCAAGGCAGCCCCCGACTGGGAGACGGATTATTCAAACTCGACGACGACAAACTATCTTGGACGACCGTGGAAGCAGTACTCAAGAACAGTGTATATGCAGTGTTACATTGGGGATTTGATCAGCCCTGTGGGGTGGTTGGAGTGGAATGGAACAGCAGGGTTGGACACTTTGTATTATGGGGAGTTTGAGAATTATGGGCCAGGAGCTAACACAAGCATGAGGGTGGATTGGCCTGGCTATAGCTTGATGAATATTACTCAAGCTATGAACTTTACTGTCTATAATCTTACTATGGGAGATACATGGCTGCCTTACACTGATATTCCCTTCTCTGGTGGTTTGGTCTAA 1695 49.56 MNSVLIFLLLLSLRRAGAFDSPPPPPPSADLCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKNCLKQAIKMSSVIGDYLDRGGDSRLNQREAGALEDCRDLSDSNVEFLRSIESVLEAAKGVDEELVERVQSILSAIVTNGQTCIDGLVESRSSLGNALTAPMSSAGQLYSVSLGLVTNSLSRLWKKRRMKGDGGDSAAGARNREPLNTLIKGLHKMGSCNQSTGCSGRKRLLADLGTTGIFINDTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVRGGYYEEYVVVPKYKTNIMLIGDGINRTVITGNHSVVDGWTTYNSSTFTVCGDRFVAIDVTFRNTAGPEKHQAVALRSSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQKCNLYARKPLPNQKIAITAQGRTDPNQNTGISIHDCTIKAAPDWETDYSNSTTTNYLGRPWKQYSRTVYMQCYIGDLISPVGWLEWNGTAGLDTLYYGEFENYGPGANTSMRVDWPGYSLMNITQAMNFTVYNLTMGDTWLPYTDIPFSGGLV 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8221292 8225551 - CmaCh18G009700.1 Cma18g00970 314308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00970 564 CDD PMEI-like_3 31 181 - -
Cma18g00970 564 Pfam Pectinesterase 249 548 IPR000070 GO:0030599|GO:0042545
Cma18g00970 564 Gene3D - 243 563 IPR012334 -
Cma18g00970 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 179 IPR006501 GO:0004857
Cma18g00970 564 PANTHER PECTINESTERASE 7 563 - -
Cma18g00970 564 Pfam Plant invertase/pectin methylesterase inhibitor 30 177 IPR006501 GO:0004857
Cma18g00970 564 SUPERFAMILY Pectin lyase-like 245 562 IPR011050 -
Cma18g00970 564 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Cma18g00970 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 182 IPR035513 -
Cma18g00970 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 7 563 - -
Cma18g00970 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 181 IPR035513 -
Cma18g00970 564 SMART PMEI_2 23 178 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01458 Cma18g00970 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00970 Cma-Chr18:8221292 Cma20g01115 Cma-Chr20:8798768 9.34E-151 dispersed
Cma18g00970 Cma-Chr18:8221292 Cma04g01458 Cma-Chr4:7415195 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00970 K01051 - csv:101206112 963.37