Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00971 ATGAGTATCTCTCCCTCTGCTTCTTCTTGCTCTTCGTCTTCCTCCTCTTGCGTCGGTTCAGATTCCGCCATTAATATTAAGAAGAAGAAGAAGAATCTCTCCGCTCCTCTCCGGCCGCACTCGGACAAAGCCAGAATCAAGCGGCGACGGAGGAATCAGGACGAATCGAAACGCGAGATTCATAATAACAACAGCAGTGGAATCAACAACAACAACAACAACGCATCTTCCACTCGCCGGAGTTCCATTTACAGAGGAGTCACGAGGCATCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGGAGCGTATGATAACGAGGAAGCTGCAGCGCGAACTTATGACCTCGCTGCCCTCAAGTACTGGGGACCGGAAACCACTCTCAATTTCCCGGCAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTAACGAAGGAAGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGTGGATTTTCTAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGACACCACTACAATGGCCGGTGGGAGGCTCGGATTGGCCGCGTTTTTGGAAGCAAATATCTTTACTTGGGAACCTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAATACAGAGGACCCAATGCAGTTACCAACTTTGACATTAGCAATTACATTGGGAGGAGATTAGAGACCAAATCATCAGTTTTTGAAGCAGCTGAGCAACCAAAAGAAGAGCCCAATGACTCCCCTGTTTCTTCCGAGGGAGAAGTTGTGTATCAGCCCGAAGAACAGCAAACGAAGTCATGGCCGAGCCTTCAATTCTCGACGATGCTTCCATCGATCGAGAATAGCCCGTCAATGGGTGTCATGGGAGACGATCATGATCTCCATTGGTCTTTCTTAGACACCGGATTTGTCGAGGTGCCTGACCTCCCGCTTGAGAAAACGAGTGAATTAGCTGATCTCTACTTTGATGAGATCGGATTTGAAGACGACATTGGCTTGATGTTCGAAACGAGCATTGAGGGTGGTGATAGTAAAGAAGATCTTAATGTTGGGAAGATGGAGATGAACAATGCTCCTTCGCCATCGTCTTCGTCGATAATAACCAACTCGGTTTCGTGCGAAAAAGATGAGATTGTTGGGTTTTGTTGA 1215 48.15 MSISPSASSCSSSSSSCVGSDSAINIKKKKKNLSAPLRPHSDKARIKRRRRNQDESKREIHNNNSSGINNNNNNASSTRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDNEEAAARTYDLAALKYWGPETTLNFPAESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHYNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGPNAVTNFDISNYIGRRLETKSSVFEAAEQPKEEPNDSPVSSEGEVVYQPEEQQTKSWPSLQFSTMLPSIENSPSMGVMGDDHDLHWSFLDTGFVEVPDLPLEKTSELADLYFDEIGFEDDIGLMFETSIEGGDSKEDLNVGKMEMNNAPSPSSSSIITNSVSCEKDEIVGFC 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8227470 8231348 - CmaCh18G009710.1 Cma18g00971 314309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00971 404 ProSiteProfiles AP2/ERF domain profile. 83 146 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 Pfam AP2 domain 181 232 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 Pfam AP2 domain 83 138 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 ProSiteProfiles AP2/ERF domain profile. 182 240 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 MobiDBLite consensus disorder prediction 62 82 - -
Cma18g00971 404 MobiDBLite consensus disorder prediction 1 82 - -
Cma18g00971 404 Gene3D AP2/ERF domain 83 148 IPR036955 GO:0003700|GO:0006355
Cma18g00971 404 Gene3D AP2/ERF domain 181 242 IPR036955 GO:0003700|GO:0006355
Cma18g00971 404 MobiDBLite consensus disorder prediction 257 289 - -
Cma18g00971 404 CDD AP2 181 242 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 SMART rav1_2 182 246 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 SMART rav1_2 83 152 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 369 - -
Cma18g00971 404 MobiDBLite consensus disorder prediction 1 22 - -
Cma18g00971 404 CDD AP2 82 147 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 6 369 - -
Cma18g00971 404 SUPERFAMILY DNA-binding domain 181 242 IPR016177 GO:0003677
Cma18g00971 404 PRINTS Ethylene responsive element binding protein signature 222 242 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Cma18g00971 404 SUPERFAMILY DNA-binding domain 82 147 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01459 Cma18g00971 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01039 Cma-Chr11:5690035 Cma18g00971 Cma-Chr18:8227470 2.48E-87 dispersed
Cma18g00971 Cma-Chr18:8227470 Cma17g00910 Cma-Chr17:6863250 2.22E-86 dispersed
Cma18g00971 Cma-Chr18:8227470 Cma04g01459 Cma-Chr4:7419665 5.82E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36807 PF00847 AP2 2.60E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00971 - - csv:101206349 506.138