Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00978 ATGGTGAAATTTGACCGGGAAAGAGTGGGCCAGGCGATCATGAGCATTGGCGGGAACGGTGTTGGCCAAGTTTTGGTTGCTGTGGCGGCGGCTCTTCTTGTCCGTATTTTCTCCGCACCAGAACCTGCTCTTCTGTTGGAGCACGATATCGAGCTCGAGGATTGGGAGAAGGTAGATGGAGACATTGAAGTTGGTGAAGAATCTCCTGCCTCCAGGAAAGTCAGTCCAGTGACAATCCGGTGGCGCAACATCACGTGCTCTCTATCTGATAAATCCTCCAAATCAGTGAGATTTCTGCTTAAGAATGTAAGCGGAGAAGCAAAACCAGGAAGATTATTAGCGATAGTGGGACCGTCAGGTTCAGGAAAAACAACGTTGCTCAATATTTTGGCCGGCCAGCTAGCGGCTTCTCCACGGTTACATCTCACTGGCATTATAGATTACAATGGAAACGCTTATTCAAATAAGAGAGCTTACAAGTTCGCTTATGTGAGACAGGAGGACCTCTTTTTCTCACAGCTAACTGTCCGAGAGACACTGAAGCTTGCTGCTGAGCTTCAGCTTACTAAGATACCTTCCGAAGAAGAGAAGGAAGAATATGTGAACAATCTGCTCTTGAAACTAGGTTTGGTAAATTGTGCTGAATCATTTGTTGGTGATACAAGAATTCGTGGAATCAGTGGGGGTGAAAAGAAACGATTGTCTCTAGGATGTGAGCTGATTGCCAGCCCATCTATTATATTTGTTGATGAACCTACAACAGGACTTGATGCATTCCAGGCTGAAAAAGTAGTCCTGACGCTTCAACAACTTGCAAAGGATGGACATACTGTGATCTGCTCCATACATCAACCTAGAGGCTCTGTGTATACCAAATTTGATGATATTATATTGCTGACAGAGGGTGCTCTTGTCTATGCTGGTCCTGCTCATGAGGAACCTGTGGAATACTTCTCTAAATTTGGGTATAGTTGTCCTGACCATGTTAATCCTGCTGAGTTTCTGGCCGATCTTATATCAATTGACTATAGTTCTCCAGAAAGTGTGTCCTCCTCCCAGAAGAGGATCTACGGTTTTGTTGAGTCATTCTCACGACACTCTTCGACAATTTTGTATGCAACTTCAAGTGACAAAAGGCAGATTTCGGCAGGTATGAAATTCAGGGAAAATAAGCTTTTGAAGAGAGGAGGCTGGTGGAGGCAATTCTGCTTGCTCCTCAAGCGTGCATGGATGCAGGCTTCTCGGGATGGACCGACAAATAAGGTTCGAGCACGAATGTCCATTGCATCAGCGATCATATTTGGTTCAGTTTTTTGGAGAATTGAAAGATCTCAGACATCAATCCAGGATAGGATGGGTTTACTTCAGGTTGCAGCAATCAACACTGCAATGGCTGCTCTCACCAAAACTGTGGGTGTTTTTTCGAAAGAACGTGCAATTGTTGATAGGGAGCGTTCAAAGGGATCTTATACGTTAGGCCCATATTTGCTTTCTAAACTGTTGGCCGAGATCCCAATTGGAGCTGCTTTTCCACTGTTATTTGGGGTTATCTTATACCCCATGGCTCGTCTTCACTCAACTGCCTCAAGGTTTGGGAAGTTCTGCAGTATCATCACTGTTGAATCTTTTGCCGCGTCTGCTATGGGTCTCACTGTAGGAGCTATGGCTCCTAGCCCAGAAGCCGCCATGGCAGTGGGGCCCTCACTTATGACAGTTTTTATTGTATTTGGTGGCTATTATGTCAATGCAGACAACACGCCGATCATCTTTCGTTGGATTCCTAGCGTTTCTCTCATAAGATGGGCCTTTCAAGGGCTTTGCATCAATGAGTTTAAAGGTCTTCAATTTGATTGTCAGCATTCAATTGATATTCAAACTGGAGAACAGGCACTGGAACGACTTTCCTTTGGTCAAAGGCGTATTAGGAACACATTGATAGCACAAAGTAGGATACTTTTGTTCTGGTATTACACCACTTACCTTCTCCTGGAAAAAAATAAGCCCAAATACCAGCAGCTTGAGCCACTGCCCCTTGGTGAAAACCAAGATCAAGGTGATCGACAATTTGAATCGTTTAACAATGACAACATGGAGAAACCCCAGCCCGGGAATCTCCGACTCTCGAGCGAGTTGAGTCAAAGGAGGCTCGAGTATACGTCGCTTGGTTGTAGGCAGATGCAAGAACGAATTGGCTTAGCTCAGTTGTCGTTGGAAAAAAAAGAAACTTTCGTCCTTCCTGTTATGCCGGAAGAAAGGATGGGATACTTCAGATTACTTTATGAAACGGGCATCGAGTTTAGTGAAGAAGACCTACTTGCTGCAATTGTGCCGTTAATGAAGCTTCTCTGCCTCGCAGTAATTGGATTGATTCTTGCTCATCCAAAGACAAAAATCATCCCAAAAGAAACATTTAGCCTGCTTTGCAAACTTGTTTTTGCCTTGTTCTTGCCCTGCCTGATTTTTACTGAACTAGGCCAAAGTATTACGCTCGAAAGTTTGACTCAGTGGTGGTTTATCCCGGTAAATGTGCTACTCAGCACGGCTATCGGCTGTGCTCTTGGGTATTTAGTGGTTGCTCTATGTCATCCACCCCCTGAGTTTAATAGATTGACTCTTGTTATGACAGCATTTGGTAATACAGGAAACCTCGCTCTTGCAGTTGTGGGGTCAGTTTGCCACACTGCAGATAACCCTTTTGGACCAAATTGTCACTCTAGTGGGGTGACTTACGTCTCACTTGCTCAATGGGTTTCGGTGATTCTGGCCTATACCCTCGTTTATCACATGATGAAACCTCCACCGGAGTGCAATGTAGTTTTAGATGAAGGCATTGAAATTGAAGAAGAACGAGCTGATAATGATTTGGGCAGGCCTCTCCTTGCAGAAGCTGAATGGCCAAGCATTGAGGGCAAAGAAACAGAACATTCCGTGACATCCTTCATCCCTAGAATTCTCAATAGCATTTCAATTACACCGCAGACCACTTCTACTGATATCGAAAGCTCAGGAGGCGGCGATTGTACTGACAATCCCAAGCCTAATGATATCGAACTTGCAGGGGACAACAGGACTAACAGTCCCAAATCCACAGAGTTCTTGGCTGGGCCGAGAGTACTGAGGAGGCTGAGCCATCTTGCTGAGCAAACTCCAATACAGCACATCCTTCAACCCCCAACAATTTCTTTTCTAGCAGCCATCATTATTGGGCTAATTCCACCACTGAAATCACTCTTCTTTGACTATAATGCTCCATTATCAGTTGTCAAAGACAGTCTAGAAATTCTAGCCCGTGCTACCGTGCCTTCTGTTATGCTCATTCTTGGGGGCTTGCTTGCAGAATGCTCAAACACATCTACACTAGGCCATCGAACCACAATCGGTATAATCACAGCAAGGCTCTTGGTCCTCCCCGTGTTGGGAATTGGGATGGTCTTGTTGGCTGATAAACTGAATTTTCTTGTTTCTGGGGATCAAATGTACAGATTTGTGCTTCTGTTGCAATACACTACCCCAAGTGCTATTTTATTGGGAGCACTAGCCAGCTTGGGAGGATATGCAATTAGGGAAGTTTCTGCACTTCTCTTCTGGCAACATATATTTGCTCTCTTCTCCCTTTCTGTCTATAAAGGCGGCTTGCAAACCGGCATTCTGATGCCTTCTTCTACGCCATTATCGTCGGGGATTCTGACTCAAGATGAACTGAAGAAGATTGCTGCGTATAAGGCCGTTGAATATGTCGAATCCGGCATGGTTCTTGGCCTTGGCACCGGCTCCACCGCCAAGCACGCCGTCGATCGAATCGGCGAGCTCTTGCGTCAAGGGAAGCTCGAGAACATTATAGGAATCCCTACTTCCAAGAAAACTCACGAACAAGCCGTCGCGTTGGGAATCCCTCTCTCAGACCTAGATTCGCACCCGATTCTTGATCTCGCGATTGACGGCGCCGATGAGGTTGATCCGCATCTGAATCTGGTGAAGGGCCGAGGAGGTTCTCTTTTGAGGGAGAAAATGGTGGAGGGGGCTTGTAAGAAGTTCGTGGTGATTGTTGATGAGTCGAAATTGGTTAAGTATTTGGGCGGAAGTGGGCTTGCTCTGCCGGTGGAGATTGTGCCTTTTTGCTGGAACTTCACCGCCGTGCGGCTGCAGAAGATGTTTGAAGAATCTGGTTGCGTTGCTAAGCTTAGGATCAAAGATGAAAGTGGAGAACCCTTTGTTACTGATAATGGCAATTACATTGTGGACTTGTTTTTGAAGAAAGATATTGGGGATTTGAATGCTGCGAGTGATGAGATTTTGCGGCTTGCTGGTGTTGTTGAACATGGGATGTTTCTTGGGATGGCTACCACTTTGATTGTTGCTGGCGAACTTGGCATTGCCATCAAGAATAAGTAG 4392 45.56 MVKFDRERVGQAIMSIGGNGVGQVLVAVAAALLVRIFSAPEPALLLEHDIELEDWEKVDGDIEVGEESPASRKVSPVTIRWRNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIVGPSGSGKTTLLNILAGQLAASPRLHLTGIIDYNGNAYSNKRAYKFAYVRQEDLFFSQLTVRETLKLAAELQLTKIPSEEEKEEYVNNLLLKLGLVNCAESFVGDTRIRGISGGEKKRLSLGCELIASPSIIFVDEPTTGLDAFQAEKVVLTLQQLAKDGHTVICSIHQPRGSVYTKFDDIILLTEGALVYAGPAHEEPVEYFSKFGYSCPDHVNPAEFLADLISIDYSSPESVSSSQKRIYGFVESFSRHSSTILYATSSDKRQISAGMKFRENKLLKRGGWWRQFCLLLKRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRIERSQTSIQDRMGLLQVAAINTAMAALTKTVGVFSKERAIVDRERSKGSYTLGPYLLSKLLAEIPIGAAFPLLFGVILYPMARLHSTASRFGKFCSIITVESFAASAMGLTVGAMAPSPEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPSVSLIRWAFQGLCINEFKGLQFDCQHSIDIQTGEQALERLSFGQRRIRNTLIAQSRILLFWYYTTYLLLEKNKPKYQQLEPLPLGENQDQGDRQFESFNNDNMEKPQPGNLRLSSELSQRRLEYTSLGCRQMQERIGLAQLSLEKKETFVLPVMPEERMGYFRLLYETGIEFSEEDLLAAIVPLMKLLCLAVIGLILAHPKTKIIPKETFSLLCKLVFALFLPCLIFTELGQSITLESLTQWWFIPVNVLLSTAIGCALGYLVVALCHPPPEFNRLTLVMTAFGNTGNLALAVVGSVCHTADNPFGPNCHSSGVTYVSLAQWVSVILAYTLVYHMMKPPPECNVVLDEGIEIEEERADNDLGRPLLAEAEWPSIEGKETEHSVTSFIPRILNSISITPQTTSTDIESSGGGDCTDNPKPNDIELAGDNRTNSPKSTEFLAGPRVLRRLSHLAEQTPIQHILQPPTISFLAAIIIGLIPPLKSLFFDYNAPLSVVKDSLEILARATVPSVMLILGGLLAECSNTSTLGHRTTIGIITARLLVLPVLGIGMVLLADKLNFLVSGDQMYRFVLLLQYTTPSAILLGALASLGGYAIREVSALLFWQHIFALFSLSVYKGGLQTGILMPSSTPLSSGILTQDELKKIAAYKAVEYVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIIGIPTSKKTHEQAVALGIPLSDLDSHPILDLAIDGADEVDPHLNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVKYLGGSGLALPVEIVPFCWNFTAVRLQKMFEESGCVAKLRIKDESGEPFVTDNGNYIVDLFLKKDIGDLNAASDEILRLAGVVEHGMFLGMATTLIVAGELGIAIKNK 1463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8264911 8277066 + CmaCh18G009780.1 Cma18g00978 314316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00978 1463 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 679 - -
Cma18g00978 1463 Pfam ABC-2 type transporter 283 340 IPR043926 GO:0140359
Cma18g00978 1463 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 1363 1444 - -
Cma18g00978 1463 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 326 IPR003439 GO:0005524
Cma18g00978 1463 SMART AAA_5 109 303 IPR003593 -
Cma18g00978 1463 SUPERFAMILY NagB/RpiA/CoA transferase-like 1230 1379 IPR037171 -
Cma18g00978 1463 MobiDBLite consensus disorder prediction 675 705 - -
Cma18g00978 1463 Hamap Ribose-5-phosphate isomerase A [rpiA]. 1231 1461 IPR020672 GO:0004751|GO:0009052
Cma18g00978 1463 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 1281 1455 IPR004788 GO:0004751|GO:0009052
Cma18g00978 1463 ProSitePatterns ABC transporters family signature. 226 240 IPR017871 GO:0005524
Cma18g00978 1463 Gene3D - 1234 1455 - -
Cma18g00978 1463 CDD ABCG_EPDR 76 308 - -
Cma18g00978 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 312 IPR027417 -
Cma18g00978 1463 MobiDBLite consensus disorder prediction 684 705 - -
Cma18g00978 1463 Pfam Membrane transport protein 775 1208 IPR004776 GO:0016021|GO:0055085
Cma18g00978 1463 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 679 - -
Cma18g00978 1463 Pfam ABC transporter 100 253 IPR003439 GO:0005524
Cma18g00978 1463 TIGRFAM rpiA: ribose 5-phosphate isomerase A 1234 1457 IPR004788 GO:0004751|GO:0009052
Cma18g00978 1463 MobiDBLite consensus disorder prediction 992 1008 - -
Cma18g00978 1463 Pfam ABC-2 type transporter 400 611 IPR013525 GO:0016020|GO:0140359
Cma18g00978 1463 Gene3D - 1357 1441 - -
Cma18g00978 1463 CDD RPI_A 1234 1454 IPR004788 GO:0004751|GO:0009052
Cma18g00978 1463 MobiDBLite consensus disorder prediction 992 1030 - -
Cma18g00978 1463 Gene3D - 68 316 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00978 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101211066 1167.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g00951 Cma18g00978 CCT
Cma15g00951 Cma18g00978 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01465 Cma-Chr4:7468988 Cma18g00978 Cma-Chr18:8264911 7.29E-152 dispersed
Cma04g02098 Cma-Chr4:14668507 Cma18g00978 Cma-Chr18:8264911 4.95E-133 dispersed
Cma05g01193 Cma-Chr5:9240127 Cma18g00978 Cma-Chr18:8264911 2.59E-99 dispersed
Cma12g01114 Cma-Chr12:8815789 Cma18g00978 Cma-Chr18:8264911 2.72E-99 dispersed
Cma15g00952 Cma-Chr15:5114595 Cma18g00978 Cma-Chr18:8264911 1.52E-134 dispersed
Cma16g01284 Cma-Chr16:9739158 Cma18g00978 Cma-Chr18:8264911 1.47E-56 dispersed
Cma16g01285 Cma-Chr16:9743689 Cma18g00978 Cma-Chr18:8264911 4.83E-53 dispersed
Cma18g00532 Cma-Chr18:3350094 Cma18g00978 Cma-Chr18:8264911 7.66E-21 dispersed
Cma18g00978 Cma-Chr18:8264911 Cma16g00791 Cma-Chr16:4359035 5.57E-87 dispersed
Cma20g00093 Cma-Chr20:400257 Cma18g00978 Cma-Chr18:8264911 6.03E-73 dispersed
Cma15g00951 Cma-Chr15:5108392 Cma18g00978 Cma-Chr18:8264911 0 transposed
Cma18g00978 Cma-Chr18:8264911 Cma04g01464 Cma-Chr4:7451812 4.23E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g401 . . . . . . Bma14g01581 . . Cmo18g00982 . Cma18g00978 . Car18g00897 . Cpe09g00339 . . . . . . . . . . . . . . . Cone13ag0778 Cone19ag0781 . . . . . . . . . . . . . . . . Cmo15g00991 . Cma15g00951 . Car15g00895 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005825 2 2 2 0 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 2 1 0 1 1 1 0 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00978 Cma_Chr18 FPKM 1.385285 1.295658 1.956499 1.744213 2.506167 2.600219 2.384393 0.572229 0.742892 0.833854