Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00986 ATGGAGAACGGGAAGCAAGGCGCCGTGGAAGAGATTTTGCTGCCGAAGCAGAAGGAAAGCAATATCTCGAGGGAAGCTTTTCTTGAAGAGGTGAAGAGAGTGGGATTCTTGGCGGCGCCGATGGTTGCCGTCACTTTGTCGCAGTTTTTGTTGCAGATGGTGACGATGATGATGGTCGGTCATCTCGGAGAACTTGCTCTCTCCAGCAGCGCCGTAGCCATTTCCATTTCTGGAGTTACAGGCTTCAGTGTTCTCTTGGGCTTGTCCAGCGCCCTCGAAACTCTATGTGGACAAGCTTATGGAGCTCGGCAATATCAAAAACTTGGAACTCAGACCTACACTGCTATATTTTGCATCTTCTTATTTTCCATTCCTATATCCCTATCATGGATTTTCTTGGAAAAGCTACTTATTTTCTTCGGTCAAGATCCTCGGATTTCGCACGAAGCTGGGAAGTTCATTGTTTGGCTGATTCCTGCGCTCTTTGCTTGTGCATTTCTTCAACCATTGGTGAGATATTTCCAGGCACAAAGTTTAGTAATCCCCATGGTCATTTGTTCTTGTATCACTCTCTCCTTCCATGTACCATTTTGTTGGTTCATGGTGTACAAGGCTGAACTCAGAAATCTGGGAGGAGCATTAGCTATGAGTTTGTCATATTGGCTGAACGTGATTTTGCTAGCATTATACATGATATTTTCACCAAAGTGTGCGACAACCCGTGGAGTCATTTCTATGGAGATGTTTCGAGGAATTCAGGAGTTCTTTAGCTTGGCAATTCCTTCTGCGGTGATGGTTTGCCTCGAATGGTGGTCATTTGAGCTGCTTATCTTACTTTCAGGGTTGTTACCAAATCCGGAGCTTGAAACTTCAGTTTTATCTGTTTGTCTCAATACAATTGCTACACTTTATTCGATACCATATGGACTTGGTGCTGCAGGAAGCACAAGAGTCTCCAATGAACTAGGTGCTGGGAATCCGCAAGCGGCTCGTCGGGCAACAAGCGTTGCTATATTCCTTGGCATTGTGGAAACCTCAATATTGACCTCAACCCTTTTTGCTCTTCGTCGTGTCTTTGGTTATGCTTTTAGCAATGAGAAGGATGTTGTGGATTATGTGGCCTCCATGGCACCTCTGGTTTGCTTATCCGTGATATTTGACAGCATCCAGGGAGTCCTTTCAGGCGTTGCTAGAGGATGTGGATGGCAACACATTGGTGCTTATGTAAACTTGGGGGCCTTCTATCTTTGTGGGGTTCCAGTTGCTGCAATTCTTGCTTTCTTGGTGCACCTGAGAGGAAGAGGCCTTTGGATTGGTATACAAACTGGGGCTTTTGTGCAAACGGCGTTGCTCTCCTTCATTACCAGCCGGATAAATTGGGAAGAACAGGCAAGAAGGGCAGGTGAGAGGCTTTCTATTTCCGAAGGCAGTTATTCAGAAGATTATGGATTTATTTGA 1458 45.47 MENGKQGAVEEILLPKQKESNISREAFLEEVKRVGFLAAPMVAVTLSQFLLQMVTMMMVGHLGELALSSSAVAISISGVTGFSVLLGLSSALETLCGQAYGARQYQKLGTQTYTAIFCIFLFSIPISLSWIFLEKLLIFFGQDPRISHEAGKFIVWLIPALFACAFLQPLVRYFQAQSLVIPMVICSCITLSFHVPFCWFMVYKAELRNLGGALAMSLSYWLNVILLALYMIFSPKCATTRGVISMEMFRGIQEFFSLAIPSAVMVCLEWWSFELLILLSGLLPNPELETSVLSVCLNTIATLYSIPYGLGAAGSTRVSNELGAGNPQAARRATSVAIFLGIVETSILTSTLFALRRVFGYAFSNEKDVVDYVASMAPLVCLSVIFDSIQGVLSGVARGCGWQHIGAYVNLGAFYLCGVPVAAILAFLVHLRGRGLWIGIQTGAFVQTALLSFITSRINWEEQARRAGERLSISEGSYSEDYGFI 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8314258 8319100 + CmaCh18G009860.1 Cma18g00986 314324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00986 485 PANTHER PROTEIN DETOXIFICATION 25 471 - -
Cma18g00986 485 Pfam MatE 261 423 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma18g00986 485 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma18g00986 485 CDD MATE_eukaryotic 30 466 IPR045069 GO:0042910|GO:1990961
Cma18g00986 485 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 471 - -
Cma18g00986 485 TIGRFAM matE: MATE efflux family protein 40 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00986 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101213643 756.133
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01256 Cma-Chr9:8434281 Cma18g00986 Cma-Chr18:8314258 1.49E-156 dispersed
Cma11g00297 Cma-Chr11:1473820 Cma18g00986 Cma-Chr18:8314258 7.09E-156 dispersed
Cma18g00986 Cma-Chr18:8314258 Cma19g00924 Cma-Chr19:8294772 2.28E-96 dispersed
Cma10g00316 Cma-Chr10:1436992 Cma18g00986 Cma-Chr18:8314258 1.64E-114 wgd
Cma11g00296 Cma-Chr11:1469380 Cma18g00986 Cma-Chr18:8314258 2.14E-159 wgd
Cma18g00986 Cma-Chr18:8314258 Cma04g01475 Cma-Chr4:7510568 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00986 Cma_Chr18 FPKM 0.0 0.0 1.530451 1.139608 6.105074 3.968769 6.944837 2.576615 1.753492 3.339661