Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00989 ATGAAGGACCGCTCTCCTTCCTCCAATGCCGCCGTCTACGTCCCTCCTCACCTCCGTCTCCGCTTCGTTCTTACTTCTTCCAATCATTCCCCTACTGTTTCCTCTGTTCACTGCAAGCTTCGCCAGGCGGAGGCTCCTGCTCCGCCTTCTCTGCATGCTCCTTCTCAGGAACTGTTCGATTCCGTCTATGACAATGGGGCTCCGGGCGTTTCACCTGCCGTCAATATTGATTTGTGGAAAAGGAAGTTGGCATTACTCTTACGTGACAAGGACATGCAAGAGGTAGTTTCAAGGGAAAAAAAAGATAGACATGATTTTGAGCAATTAGCTGCTTTGGCGAGTAGCATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCAGTTTTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACTGAGGGAGATGAACATCTGGGAGAGTCTCTCTCAGAAGTCTAGGTTTGAAGGTTTTCAAGATGTCTCTGACTATAGATCAATTAGCAGTGGTGGCATTGCTACGGATGAAGGGCTTTTTGAGCAACCTGAGCTACAAGCATCTAGTAAGGCTGTGATGGAACAAATTCTTTGGCGAAGAAGTTTGCATCTGCGTGAACAACAGCATGCTTGGCAGTCATCTCCTGAAGGAAGAGAAATGCTGGAGTTTCGGAAAAGTCTCCCTGCTTACAAGGAGAAGGATGCAATATTGACCACAATCTCACATAATCAGGTTATTATTATATCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAATTCATTTTGGAATCAGAAGTAGAATCACTTCGTGGAGCTGGTTGCAGCATCGTATGTACACAGCCAAGACGAATATCTGCTATGTCTGTCTCTGAGAGAGTCACTTCTGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATAAAGGGGAGGGAGACTCATCTACTCTTTTGTACCACGGGCATCTTGTTCAGAAGATTGTTGGTTGATAGAAATTTGAAAGGCATAACTCATGTTATTGTTGACGAAATCCATGAACGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGGCGGCCAGAATTGAGGTTGATTCTAATGAGTGCATCTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGTGCTCAAATTATTCACATTCCGGGATTCGCACACCCTGTCCGAACTCATTTTCTGGAGGATATTCTAGAAATGACGAGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCAAGACAAGACGTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCCTCTGTTCAGCATAACGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTTCTCTATTCGAACTCTGTCAATGCCCGAGAGTCGAGGATTCCATATCCATGGCTAGTTTTCAATGAGAAGATAAAAGTGAACTCTATTTTCCTTCGAGATTCAACAGCTATTTCTGACTCAATGCTGCTTCTCTTTGGTGGAAACATCTCAAAGGGTGATCATGATGGACACTTGAAAATGTTGAGCGGTTTTTTGGAATTTTTTATGAAACCTGATGTATCTGAGATGTATCAGAAATTAAGATTGAAACTTGAAGAGCTTATACAGAAGAAAGTAAGTGGAATATCGTATGCGCTACTAGATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGATCAGTGTGAAGGTCAATTCGTTTTTGGCCGACAGATCTTTCAGCAGCCCTCCATGGCATCTACTACTTTGGCAGCGGCACCAACTTCTGTTTCAAGAACTGAAAGTCGACCTGGTGGTGACAATTCTGAAAGTCAGCTCCAGACATTACTAACGAGGGCTGGATATGCTGCACCCACCTATAAGACTAAGCAATTGAAGAACAATCAATTTCGAGCAACTGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTGCCAACAAGAAGAATGCAGAAAAGGACACAGCAGCTGAGGCTCTTGAGTGGTTGATGGGTGGAACTCAGTTGGAGCACGACTATATCAATCAAATGTCTCTGATGCTAAAAAAGGAACAAGAAGGATCATAA 2208 43.57 MKDRSPSSNAAVYVPPHLRLRFVLTSSNHSPTVSSVHCKLRQAEAPAPPSLHAPSQELFDSVYDNGAPGVSPAVNIDLWKRKLALLLRDKDMQEVVSREKKDRHDFEQLAALASSMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPLREMNIWESLSQKSRFEGFQDVSDYRSISSGGIATDEGLFEQPELQASSKAVMEQILWRRSLHLREQQHAWQSSPEGREMLEFRKSLPAYKEKDAILTTISHNQVIIISGETGCGKTTQVPQFILESEVESLRGAGCSIVCTQPRRISAMSVSERVTSERGEKLGESVGYKVRLEGIKGRETHLLFCTTGILFRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSASLDAELFSSYFGGAQIIHIPGFAHPVRTHFLEDILEMTSYRLTPYNQIDDYGQDKTWKMSKQAPRKRKTQIASSVQHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWLVFNEKIKVNSIFLRDSTAISDSMLLLFGGNISKGDHDGHLKMLSGFLEFFMKPDVSEMYQKLRLKLEELIQKKVSGISYALLDPKMDLHSHHELLSAVRLLISEDQCEGQFVFGRQIFQQPSMASTTLAAAPTSVSRTESRPGGDNSESQLQTLLTRAGYAAPTYKTKQLKNNQFRATVEFNGLQIMGQPCANKKNAEKDTAAEALEWLMGGTQLEHDYINQMSLMLKKEQEGS 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8336165 8343174 - CmaCh18G009890.1 Cma18g00989 314327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00989 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 421 IPR027417 -
Cma18g00989 735 SUPERFAMILY dsRNA-binding domain-like 646 724 - -
Cma18g00989 735 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 55 440 - -
Cma18g00989 735 PANTHER ATP-DEPENDENT RNA HELICASE 463 649 - -
Cma18g00989 735 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 460 532 IPR011709 -
Cma18g00989 735 Gene3D - 188 411 IPR027417 -
Cma18g00989 735 SMART ultradead3 231 424 IPR014001 -
Cma18g00989 735 Pfam Double-stranded RNA binding motif 650 710 IPR014720 -
Cma18g00989 735 CDD DEXHc_RHA-like 249 409 - -
Cma18g00989 735 Gene3D - 625 714 - -
Cma18g00989 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 243 410 IPR014001 -
Cma18g00989 735 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 463 649 - -
Cma18g00989 735 MobiDBLite consensus disorder prediction 630 649 - -
Cma18g00989 735 CDD DSRM_SF 653 707 - -
Cma18g00989 735 Pfam DEAD/DEAH box helicase 242 393 IPR011545 GO:0003676|GO:0005524
Cma18g00989 735 PANTHER ATP-DEPENDENT RNA HELICASE 55 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00989 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 722.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00989 Cma-Chr18:8336165 Cma14g00364 Cma-Chr14:1599598 3.10E-17 dispersed
Cma10g00315 Cma-Chr10:1428868 Cma18g00989 Cma-Chr18:8336165 3.04E-97 wgd
Cma18g00989 Cma-Chr18:8336165 Cma04g01482 Cma-Chr4:7533692 9.22E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00989 Cma_Chr18 FPKM 0.179395 0.0 0.0 0.0 0.817142 1.080493 0.985164 0.0 0.0 0.0