Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00990 ATGGAGAGAAGTTGTGAATTCTGTGCTGCACTGAGGCCAATTATTTACTGTACGCCTGATGCAGCTCACCTTTGTCTTTCCTGTGATGCAAAAGTTCATTCAGCTAATACACTTTCAAGTCGACATCTTCGGACTCTCTTGTGCGAATCATGCCGAAGTTTCCCTTCTTATCTTCAGTGTTTAGATCATCGAATGTTCTTGTGTCGTAGCTGTGACCGAGCGCTTCATGTTGCCTCGTCCCAACACCAGAAAAAGATTATCAGAGGATACATGGGATGTCCTTCAGCCAAGGATTTTGCACAACTTTGGGGTTTTCATGTCAATGAAGTTGACAAAGATAAGTTTGTGTCCAATTCTGGCTCTGATACTTCCGGTGTTATGGCTTTCGACACAGCAGGACGAAGCTGTTTGCGTATAGCTGGAGTAGCTCGAATGAGCTATCCCCCTCATGCTGAAGCTGAAAACAAGATGCTTTACAAAGGTCAAGAAAAGGGCACTTCATTCATTTTTCAACAAATTCTAGACTTGAGTCGTCTCCAGCTTATAAAGAAGAATAACGATTCGCCTTTGATTCTTGGTGACGGAAAAGATGGCGCGTTTTCTGTAAGGCCTTGTGCGTCGGAGAAGTTCGAGCGATCTCTTAATCAACACCTGCACCCTTCCGAGGACCGGGGTACCGAACTTCCGCAAAAGGACAGTTCACTTCAGGAGGAGAAAATGTTATCGTTTACTCAGCTTGAGAATTTTCCATTGTCATCCCCTATTTTGATTCCTTTCCATGGAGAATCCCTTTGGCATTGTAAAAGCCCAGCTGAGAGTAGTCAGCTATGGTCTCAGAATATGCAAGATCTTGGAGTTTGTGATGAGCTTGTTTGTCGCGATGATTTCAACATACCTGAAGTCGATTTAACGTTCCAGAACTTCGACGAGATATTCAACAGTGATCAAGATCCTATGGGAGGATTGTTTGATAATAAAGATGAGTCATTCTCCTCCATCGAGAAGGATATGTTGTTCGATAAAGAGGATAATCACCATGGAAACGGGATGGAGGCAAGCTCGGGTAGGTCGACATCTTGCATCTTCCCGTCGGATCTTATGGACAAAGATAGTGATGATCCATCTGGTGAAGCTTGTAGGCCTCCCACGAGTACAACCACGGAACGTGCTCGTCCAATCCGACCCTCCTTTTCAACTTTGTCGTTTGTTGATTCAAGGATGAGTGTTGACACTGCAAGTACTGGTTGCCCTGATGGGGCTGGAGGCGAGCCTTCATGCAGCTCGCCTTACCGTCGTGAGCGTAAACAGTCCGTGCCCCTCAACGACCACGCCGCAACAAGAGGGTACAAAGAAAATCAGCAATCTCAACAGCAAGAGAAACAAATTCGACGTAAGGGCAGATCTCTCGTGAAGAAACGAGTAAAGGGTCGATACGAAGAAGGCGATCGATATGACTCGAATGCCGTTGCTATCAGTCGAAGTTATTGA 1488 45.5 MERSCEFCAALRPIIYCTPDAAHLCLSCDAKVHSANTLSSRHLRTLLCESCRSFPSYLQCLDHRMFLCRSCDRALHVASSQHQKKIIRGYMGCPSAKDFAQLWGFHVNEVDKDKFVSNSGSDTSGVMAFDTAGRSCLRIAGVARMSYPPHAEAENKMLYKGQEKGTSFIFQQILDLSRLQLIKKNNDSPLILGDGKDGAFSVRPCASEKFERSLNQHLHPSEDRGTELPQKDSSLQEEKMLSFTQLENFPLSSPILIPFHGESLWHCKSPAESSQLWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPMGGLFDNKDESFSSIEKDMLFDKEDNHHGNGMEASSGRSTSCIFPSDLMDKDSDDPSGEACRPPTSTTTERARPIRPSFSTLSFVDSRMSVDTASTGCPDGAGGEPSCSSPYRRERKQSVPLNDHAATRGYKENQQSQQQEKQIRRKGRSLVKKRVKGRYEEGDRYDSNAVAISRSY 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8348435 8350861 - CmaCh18G009900.1 Cma18g00990 314328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00990 495 MobiDBLite consensus disorder prediction 342 495 - -
Cma18g00990 495 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 432 - -
Cma18g00990 495 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Cma18g00990 495 CDD Bbox1_BBX-like 47 84 - -
Cma18g00990 495 SMART bboxneu5 48 87 IPR000315 GO:0008270
Cma18g00990 495 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cma18g00990 495 MobiDBLite consensus disorder prediction 378 412 - -
Cma18g00990 495 CDD Bbox1_BBX-like 5 47 - -
Cma18g00990 495 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00990 - - - bhj:120081570 782.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00990 Cma-Chr18:8348435 Cma20g00636 Cma-Chr20:2965397 3.42E-24 dispersed
Cma18g00990 Cma-Chr18:8348435 Cma20g00703 Cma-Chr20:3247766 4.51E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g369 . . . . . . . . . Cmo18g00997 . Cma18g00990 . Car18g00911 . Cpe09g00327 . Bhi07g01277 . . . . . . Cla05g02266 Cam05g2436 Cec05g2456 Cco05g2500 Clacu05g2430 Cmu05g2293 Cre05g2411 . . . . Lsi04g00215 Csa05g02652 Chy10g01184 Cme10g00220 Blo06g01044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009707 1 4 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 2 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00990 Cma_Chr18 FPKM 5.02309 5.677248 13.276672 11.886568 20.582403 24.180054 23.179001 4.18802 3.975438 3.354441