Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00995 ATGTCTTCCGGCGGCGGTGAGGTTGAAGTCAAGGATGTGTTTATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTGGTGGCTTTTGGCGCTCAAAACGCCGTCGCTATTTTCTGTCCCAAGTCTGCACAAATATTGACGACTCTTCCCGGTCACAACGCCTCTGTAAACTGCACTCATTGGCTTCCAAGTAGCAAGTTTGCGTTCAGAGCAAAGCATTTGAACTGTCATTATCTGCTTTCTGGTGATTCTGATGGTGCCATTCATTTATGGGAATTTTCGCTTCTGAACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCGTCACATGTATTACTGCACATATAATTTCTGAAACCGCGGCAATTGTTGCGTCTTCTTCTTCAGATGGTTCAGTTTGTGTCTGGGAGGTTTCTTTTCCGTCTACCAATGAAGGTGATTGTACATTGCTGTTGCTTGACACACTCTTGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAGTTGCCTGGAAATGCCAATCATATGGTCTTGGCAATGGGAGGTTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAAAGTTTGTCAAGGCATGTGAGCTAAAAGGACACACGGATTGGATTAGAAGTCTGGACTTCTCTTTGCCCATATGCAAAACTGGAGAAGAAAATAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGTTCTTCATGGTTCTTTGGCCAACATGAATGGAGGATGCAAAAAAGAGGAAATAAGTTTATCATCTTATATACAAGGTCCTATATTTACTTCTGGACCATCAACTTACCAGGTATCATTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCGGTCCAATGGCAGCCTCCTTCAGCAGCAGAAACAGAAGGGGTTCCCTGCTATCAATCTGAAAGTATCTTATCTGCATCTATGGACAAGACAATGATGATTTGGAAACCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTCTGCTTTAGGGTTTTATGGTGGGCATTGGAGCCCTAACGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCGCTGGAGAGATGTTGGTATCAGTTCAGGTAACTGGAAACCTCAAAAGGTTCCCTCAGGACACTTTGCAGCTGTCACGGATATTTCATGGGCCAGATCTGGTGATTATTTTGTTTCAGTCAGTCATGACCAGACAACTCGGATTTTTTCTCCCTGGAAAAATGTAAATTCTCTTGAAGGAGGTTCTTGGCATGAAATAGCTCGACCTCAAGTCCATGGGCATGATATTAATTGTGTCACCTTAATCCAAGGTAAGGGGAACCATCGCTTTGTCAGTGGAGCTGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTCTAAAGACGTTGAGTCATGCCACACAGCAGAATTTTGTGGCCACGGAAGATCATCTTGTGGATGTTCAGATTTTGGGCGCTAATATGTCGGCTCTTGGGCTCTCACAGAAACCTATTTATGTTCACTTCAGTCATCTTTGTGCAGCTGCTAATAAGAATCCGGACAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCGATGCAGTTCCTGTTGTTCTGACTGAACCTCCCATTGAAGATCAACTAGCATGGCATACACTTTGGCCTGAGTCGCACAAACTTTATGGTCATGGAAATGAGCTATTTTCTCTTTGTTGTGATCACAAGGGGAAGCTTGTTGCTTCATCCTGTAAGGCACAAACTGCATCAGTAGCCGAAATATGGCTTTGGGAAGTTGGTTCGTGGAAGGCAGTTGGTCGTCTGCAATCGCACAGCTTAACAATAACACAAATGGAGTTTTCCCGTGATGACAGCATGCTGTTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTTAAAATCCAGAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAATCCATTTGGTCACGAGTTTGCAACAGGCTCTAGGGATAAGACTGTGAAGTTATGGACTGTGACACCTGATTCTTCAGTTAAGCAACTAGCAACTTTGTCACAGTTCAAATCTAGCGTCACCGCCTTATCGTGGGTCGGTCTTGATCCTGAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTCCTTGAGCTATGGAGTTTATCTATCAAAAGAACTGAAGGAGTTGGCTCAAATGTGGTTGCTTCAGTCGTAAAACGTCTCGATCCATTTGTGTGCCACGTTTCCTCGGTCAACCGTTTGTCATGGAGGGAACCAGAGGAGGAGATCGAAGAGTGCAGGAAGCTGCAGCTTGCTTCCTGTGGGGCTGACCACTGTGTTAGAGTGTTTGAGGTAAAAGTTTCTGTATGA 2535 43.79 MSSGGGEVEVKDVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFCPKSAQILTTLPGHNASVNCTHWLPSSKFAFRAKHLNCHYLLSGDSDGAIHLWEFSLLNQKWRNVLQLPKSHKKGVTCITAHIISETAAIVASSSSDGSVCVWEVSFPSTNEGDCTLLLLDTLLVGSKSMVALSLAELPGNANHMVLAMGGLDNKIHLYCGKRTGKFVKACELKGHTDWIRSLDFSLPICKTGEENSIMLVSSSQDRGIRIWKMVLHGSLANMNGGCKKEEISLSSYIQGPIFTSGPSTYQVSLESLLIGHEDWVYSVQWQPPSAAETEGVPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHSALGFYGGHWSPNGDSILAHGYGGSFHRWRDVGISSGNWKPQKVPSGHFAAVTDISWARSGDYFVSVSHDQTTRIFSPWKNVNSLEGGSWHEIARPQVHGHDINCVTLIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATQQNFVATEDHLVDVQILGANMSALGLSQKPIYVHFSHLCAAANKNPDRSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSRDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPFGHEFATGSRDKTVKLWTVTPDSSVKQLATLSQFKSSVTALSWVGLDPESNGLLAVGMENGLLELWSLSIKRTEGVGSNVVASVVKRLDPFVCHVSSVNRLSWREPEEEIEECRKLQLASCGADHCVRVFEVKVSV 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8388108 8394716 - CmaCh18G009950.1 Cma18g00995 314333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00995 844 SUPERFAMILY WD40 repeat-like 691 840 IPR036322 GO:0005515
Cma18g00995 844 Gene3D - 171 283 IPR015943 GO:0005515
Cma18g00995 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Cma18g00995 844 SUPERFAMILY WD40 repeat-like 23 395 IPR036322 GO:0005515
Cma18g00995 844 PANTHER ELONGATOR COMPLEX PROTEIN 2 7 842 - -
Cma18g00995 844 Pfam WD domain, G-beta repeat 405 442 IPR001680 GO:0005515
Cma18g00995 844 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Cma18g00995 844 Pfam WD domain, G-beta repeat 113 148 IPR001680 GO:0005515
Cma18g00995 844 Pfam WD domain, G-beta repeat 696 725 IPR001680 GO:0005515
Cma18g00995 844 Pfam WD domain, G-beta repeat 217 258 IPR001680 GO:0005515
Cma18g00995 844 Pfam WD domain, G-beta repeat 303 347 IPR001680 GO:0005515
Cma18g00995 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 694 727 - -
Cma18g00995 844 Gene3D - 2 170 IPR015943 GO:0005515
Cma18g00995 844 Gene3D - 284 397 IPR015943 GO:0005515
Cma18g00995 844 Gene3D - 398 532 IPR015943 GO:0005515
Cma18g00995 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 443 IPR001680 GO:0005515
Cma18g00995 844 Gene3D - 690 843 IPR015943 GO:0005515
Cma18g00995 844 PANTHER WD REPEAT-CONTAINING 7 842 - -
Cma18g00995 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 735 IPR001680 GO:0005515
Cma18g00995 844 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Cma18g00995 844 PRINTS G protein beta WD-40 repeat signature 713 727 IPR020472 -
Cma18g00995 844 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Cma18g00995 844 Gene3D - 582 686 IPR015943 GO:0005515
Cma18g00995 844 SMART WD40_4 687 726 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 296 347 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 638 677 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 591 635 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 106 149 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 211 258 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 455 496 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 792 839 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 732 775 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 404 443 IPR001680 GO:0005515
Cma18g00995 844 SMART WD40_4 49 99 IPR001680 GO:0005515
Cma18g00995 844 SUPERFAMILY WD40 repeat-like 189 733 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00995 K11374 ELP2; elongator complex protein 2 - csv:101209018 1522.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00995 Cma-Chr18:8388108 Cma06g00471 Cma-Chr6:2228282 2.19E-06 dispersed
Cma18g00995 Cma-Chr18:8388108 Cma04g01487 Cma-Chr4:7572116 4.55E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00995 Cma_Chr18 FPKM 8.025632 8.897877 14.064402 15.341698 10.079831 9.189986 10.705584 31.858446 30.437122 36.347042