Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00997 ATGGAAAACCCTCCTTCCATGTCCTTCATCTTTCTCCTCTGCAATTTCTGTCTTTCAATGGCGGCTTTGAACGACGAGGGCACCGCCCTTTTCTCCTTCAAACAGTTCATCACAGAAGACCCAGACGGCTCCCTCAGCAACTGGAATTCTTCAGATCAAAACCCTTGTTCTTGGAATGGCGTTACATGCAATGATCTAAGAGTCGTTTCCCTTAGTATTCCCAAGAAGAATCTCAAAGGGATTCTCCCTTCTTCGTTGGGGATTCTTTCTCACCTTCGCCATGTGAATCTAAGGAACAATAAACTCCATGGAACTCTGCCATTGGAGCTTTTCCAAGCTAATGGAATACAGAGCTTGGTGATTTTTGGGAATTCCTTTTCTGGGTTTGTCCCAAATGATGTTGGTAAGCTCAAAAACCTTCAAATCTTGGATTTATCTCACAATTTCTTTAATGGGTCGTTGCCTGTTTCGTTGATTCAATGCACAAGACTTAGAATTCTTGATATTAGTCACAATAATCTTACCAATGCTCTGCCTGTTGGATTTGGTTCTAGTTTGAATTTCTTGGAAAAATTGGATGTTTCTCACAATATGTTCAATGGTTCAATCCCTATGGATATTGGTAATCTCTCTAGCTTACAAGGAACTGTTGATTTCTCATATAATTTGTTCTCTGGTTCAATCCCTGCTAGCTTAGGAAACCTTCCTGAAAAGGTTTATATTGATCTTAGTTATAATGATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGACCTACTGCTTTCATTGGTAATCCTGGTCTTTGTGGACCTCCATTGAAGAATCCGTGTTCTTCGGAAGCTCCAGGCGCGAGTTCGCCGTCATCGTTCCCGTTTTTCCCGGATAATTCTCCACCTGGGAGGTCTGAGGGTGGTAATGGTAGTAAGTATGACAAAGGAGGGTTGAGTAGGAGCACGTTGGTTGCAATAATCGTCGGCGACATTATCGGTATCTGTCTGATTGGGTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGGACTCGTAGAAATGGGAAGAAGGTAGACGAATCTAAAGATGGTTTTCAGAAAGGAAGAAGAAAGGATTGTCTCTGCTTTCAAAAGGGTGAATCCGAGAATGTTTCGGAGCATGTCCAGCAGTTTGATCTCGTACCTCTTGATTCAAACGTGACGTTTGATCTCGACGAACTTCTTAAGGCATCGGCGTTCGTTTTGGGGAAAAGTAGTATCGGGATAGTGTATAAAGTCGTGCTCGAAAATGGCCTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCACAAAGGTTTAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGCTAAGGCATCCAAATGTTGTTGGCCTTAGAGCTTATTATTGGTCTGTTGATGAAAAACTGCTTATTTATGATTACATATCAAATGGAAGCCTTGCATTTGCCATTCATGGGAAGCCCGGGACATCGTCGTTTACACCGTTACCGTGGTCTGTTCGGTTAAGAATCATGGAAGGTATTGCAAAAGGGTTGGTTTACTTGCATGAGTTTAGCCCCAAAAAGTATGTCCATGGCAATTTGAAGACGAACAACGTACTTCTCGGACACAACATGGTACCTCATATTTCAAATTTCGGGCTTGCTCGACTTGTTAACATCGCTGGAGGATCTCCGACTCTGCAATCGGGTCACTTGACAGACGAAAAACCCCACGAGAAACAGCTTAAGTCTGCAACTTCTGAAGCTAGTACATTCAGTTCTAATATGAATACTTACTACCAAGCCCCAGAAGCTTTAAAGGTCGTGAAGCCATCCCAGAAATGGGACGTTTACTCGTTCGGTGTGATATTACTCGAAATGATCACTGGAAGGTTGCCGATAGTTCAAGTTGGAGTGTCGGAGATGGATCTTGTTCAATGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCGGATGTTATAGATCCGTCTTTGACACCGGACGACGATTCAGACGAGGAGATTATCACGGTTTTGAAGATATCTTTAGCTTGTGTTCAAAATAGTCCCGAAAGAAGACCGACGATGAGACATGTTTCTGATGCATTGAGTAGGATGGTTGTGAATCCAAAGTGA 2151 42.58 MENPPSMSFIFLLCNFCLSMAALNDEGTALFSFKQFITEDPDGSLSNWNSSDQNPCSWNGVTCNDLRVVSLSIPKKNLKGILPSSLGILSHLRHVNLRNNKLHGTLPLELFQANGIQSLVIFGNSFSGFVPNDVGKLKNLQILDLSHNFFNGSLPVSLIQCTRLRILDISHNNLTNALPVGFGSSLNFLEKLDVSHNMFNGSIPMDIGNLSSLQGTVDFSYNLFSGSIPASLGNLPEKVYIDLSYNDLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSEAPGASSPSSFPFFPDNSPPGRSEGGNGSKYDKGGLSRSTLVAIIVGDIIGICLIGLLFSYCYSRFWTRRNGKKVDESKDGFQKGRRKDCLCFQKGESENVSEHVQQFDLVPLDSNVTFDLDELLKASAFVLGKSSIGIVYKVVLENGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVVGLRAYYWSVDEKLLIYDYISNGSLAFAIHGKPGTSSFTPLPWSVRLRIMEGIAKGLVYLHEFSPKKYVHGNLKTNNVLLGHNMVPHISNFGLARLVNIAGGSPTLQSGHLTDEKPHEKQLKSATSEASTFSSNMNTYYQAPEALKVVKPSQKWDVYSFGVILLEMITGRLPIVQVGVSEMDLVQWIQLCIEEKKPLSDVIDPSLTPDDDSDEEIITVLKISLACVQNSPERRPTMRHVSDALSRMVVNPK 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8398722 8401477 - CmaCh18G009970.1 Cma18g00997 314335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00997 716 SUPERFAMILY L domain-like 24 278 - -
Cma18g00997 716 SMART LRR_typ_2 162 184 IPR003591 -
Cma18g00997 716 SMART LRR_typ_2 89 113 IPR003591 -
Cma18g00997 716 SMART LRR_typ_2 137 161 IPR003591 -
Cma18g00997 716 Pfam Leucine Rich Repeat 139 157 IPR001611 GO:0005515
Cma18g00997 716 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Cma18g00997 716 MobiDBLite consensus disorder prediction 283 314 - -
Cma18g00997 716 Pfam Protein kinase domain 415 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00997 716 Gene3D Phosphorylase Kinase; domain 1 377 484 - -
Cma18g00997 716 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 714 - -
Cma18g00997 716 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 7 714 - -
Cma18g00997 716 SUPERFAMILY Protein kinase-like (PK-like) 414 708 IPR011009 -
Cma18g00997 716 Gene3D Ribonuclease Inhibitor 76 284 IPR032675 -
Cma18g00997 716 Gene3D Ribonuclease Inhibitor 17 75 IPR032675 -
Cma18g00997 716 ProSiteProfiles Protein kinase domain profile. 409 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00997 716 Gene3D Transferase(Phosphotransferase) domain 1 485 715 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02078 Cma18g00997 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00060 Cma-Chr15:305392 Cma18g00997 Cma-Chr18:8398722 0 dispersed
Cma18g00707 Cma-Chr18:6442392 Cma18g00997 Cma-Chr18:8398722 0 dispersed
Cma18g00997 Cma-Chr18:8398722 Cma20g00971 Cma-Chr20:4949033 9.00E-132 dispersed
Cma18g00997 Cma-Chr18:8398722 Cma04g01489 Cma-Chr4:7578697 0 wgd
Cma18g00997 Cma-Chr18:8398722 Cma04g02078 Cma-Chr4:14146147 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69307 PF00069 Pkinase 2.20E-28 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00997 - - cpep:111801478 1313.52