Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01002 ATGGAATTTCATATGGCGTTGTTCTGTTCTTTCAGTTTGTCCTTTGTTCTTTCTCATCTAGTAGCACATCCTTTGGCTCGGAATGATACTAGTTTCGTTCGTCCAGATTGCCCGCCCTTCGATTGTGGAAATTTTGGCTTCTTAGGATTCCCTTTTAACAACGAAACGCTTACTGATTGCGGATTACACACAGTTAGAAACTGCTCAGGAAAGCCAAAAATCCAGCTGAAACGTGAACGAGATGTATGGTTTGATGTTGTTAGCATATCTCAGGCTAATATCATCCATATCAATGACACGGAACTTCAAAAGCAAATAAACTCTCGCAATTGTTCAATTCTGGACGATCTGTCTCTTCCGACGTCTCCTTCATTTTCTTTATCCACAAACAATAATATTACTTTATACAATTGCACAGATAATCCTGGAGATGCTTTTCCTCTTTTCATCAGTAAATTTAGCTGCCCTGGTATTTATTCAATCCTCAACTCTGATACTCCTCCAAACTGTTCCACTTCCAATTCTAGATTTTTAGTTCCAGTTCTCCCGGTTGGTCCCAATAATTCTGTTCTTGAGTTTACTGCTGATTTCCAACTGCGAGTGACCGTATCTAGTATATGTTATGACTGTTTCCGTGAAGGAGGCCAATGCTCGTTTACCAATGAAAAATTTGTGTGTAAGGATGGAAAACGAAAAGTAAGCAAAGATAAAAGTAGAATGAGCTTGTTGATAGCACTAGGTGTTGGAGTCCCAGGTGTAAATCTGCTTATTCTATTATTTGCTCTTTGGTACTGCAAAAAAAGGCGCGCTGCTCCAAACATGCTAACAAGAAATATATCTTGTGAACCCTACTCAAAATTCGACCTGGAAGATGGTGATGTGTGCTTTGAAGTTCCTGTTTTCTCATATGGCGAACTCGAAATGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGTGGTTTTGGAACCGTATACCATGGGAAACTCCTTGATGGCCGGGAAGTTGCCGTGAAGCGCCTATATCAACATAACTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCACCCGCCTTCGCCATAAAAATCTGGTCTCCCTTTATGGATGCACTTCAAAACGCAGTCGTGAACTTCTTCTTGTTTATGAATTTGTTGCAAATGGTACTGTTGCTGATCATCTTCATGGCGAACAAGCAAGTTTTAGCTTGCTCACATGGCCTATTCGGATGACCATCGCTATTGAAACAGCAAGTGCTCTAGTTTATCTCCACGCTTCTGATATCATTCATCGTGATGTGAAGACTACTAACATTCTCTTGGACAGTAATTTTTCTGTCAAAGTCGCTGATTTTGGTCTCTCTAGATTATTCCCAAACGACGTTAGTCATGTCTCGACTGCTCCTCAAGGCACCCCTGGTTACGTTGATCCTGAGTATTATCAGTGTTATCAGCTTACAACCAAGAGCGATGTTTATAGTTTTGGTGTCGTCTTAATCGAGCTTATATCGTCAATGCCAGCTGTTGATATAACAAGGCATCGGCACGAGATTAATTTGTCTAACTTAGCCGTGGACAAAATTTTAAGACAGGAAATTGATGAGCTGATTGATCCATGCCTCGGGTATCAATCAGACGAAAAGGTTCGACGGATGATATTGGCAGTGGCTTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGGAGACCAACAATGGAAGAAGCGCTGGAAACTTTAAAGAGGATTGAGAGTGGGGAAGAAAGCGAGAATTTGCAGGATAATAGTGCACTGTTGAAGAGCTATGATCCAGCTCCTTCTCCAGAGTATGATGAAGTTGAATTGTTGAAGAATAAGAGACAGCAGCTGTTGTCCCCTACTTCTGTTGCTGATAAATGGATCAGCTCAACCTCATTTGTTAGTGCTTCTACTTCTCTATCATCTATTTCCTAA 1968 40.8 MEFHMALFCSFSLSFVLSHLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDCGLHTVRNCSGKPKIQLKRERDVWFDVVSISQANIIHINDTELQKQINSRNCSILDDLSLPTSPSFSLSTNNNITLYNCTDNPGDAFPLFISKFSCPGIYSILNSDTPPNCSTSNSRFLVPVLPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSFTNEKFVCKDGKRKVSKDKSRMSLLIALGVGVPGVNLLILLFALWYCKKRRAAPNMLTRNISCEPYSKFDLEDGDVCFEVPVFSYGELEMATNKFDRDKELGDGGFGTVYHGKLLDGREVAVKRLYQHNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSKRSRELLLVYEFVANGTVADHLHGEQASFSLLTWPIRMTIAIETASALVYLHASDIIHRDVKTTNILLDSNFSVKVADFGLSRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVDKILRQEIDELIDPCLGYQSDEKVRRMILAVAWLAFLCLQQDKERRPTMEEALETLKRIESGEESENLQDNSALLKSYDPAPSPEYDEVELLKNKRQQLLSPTSVADKWISSTSFVSASTSLSSIS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8418549 8422173 + CmaCh18G010020.1 Cma18g01002 314340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01002 655 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 640 - -
Cma18g01002 655 ProSiteProfiles Protein kinase domain profile. 313 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01002 655 CDD STKc_IRAK 319 588 - -
Cma18g01002 655 Gene3D Phosphorylase Kinase; domain 1 288 389 - -
Cma18g01002 655 SUPERFAMILY Protein kinase-like (PK-like) 296 590 IPR011009 -
Cma18g01002 655 SMART serkin_6 313 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01002 655 MobiDBLite consensus disorder prediction 590 611 - -
Cma18g01002 655 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 640 IPR044652 -
Cma18g01002 655 Pfam Protein kinase domain 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01002 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cma18g01002 655 Gene3D Transferase(Phosphotransferase) domain 1 390 609 - -
Cma18g01002 655 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00054 Cma-Chr15:282771 Cma18g01002 Cma-Chr18:8418549 3.58E-156 dispersed
Cma18g01002 Cma-Chr18:8418549 Cma12g00502 Cma-Chr12:2602510 2.88E-86 dispersed
Cma10g00308 Cma-Chr10:1393265 Cma18g01002 Cma-Chr18:8418549 1.51E-151 wgd
Cma11g00286 Cma-Chr11:1425816 Cma18g01002 Cma-Chr18:8418549 4.73E-158 wgd
Cma13g01013 Cma-Chr13:7795485 Cma18g01002 Cma-Chr18:8418549 6.60E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69308 PF00069 Pkinase 1.80E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01002 - - bhj:120081441 1006.13