Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01003 ATGGCTTCCAGAGAAGGGAGGCGTCGCCATCATCATCATCATAATCTGGTGCCTCTTGCTGCTTTGATCGGTAAAGAGGTGAGGAATGAGAGATTGGAGAAGCCGACTATAAGATATGGGAGTGCTGCGCAGTCTAGGAAGGGGGAGGATTATTTTCTTATGATAACTGATTGTCAGCGAGTACCTGGGAACCCTTCATCCACTTTTTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCTGCAATTTTCACCAGGGAACATTTGTTGAGCCATGTCTTAGGTGCACTTCCTCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCTCGAGCTTTGGTTGCTGGATTTGTGAAGACGGACAAGGAGTTTCAAAGCCGAGGTGAAACTTCTGGAACGACAGCTACGTTTGTAATCATCGATGGATGGACAGTGACAGTAGCGTCGGTTGGAGATTCTCGATGTGTTTTAGATACTCAGGGTGGTGCTGTCTCTGCATTAACGATCGATCATAGACTTGAAGATAATGTTGAAGAGCGAGAACGTGTGACTGCCAGCGGTGGGGAGATCGGAAGATTAAGCATTGTTGGTGGTGCTGAGATCGGTCCGCTCCGGTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCGATCGGAGACCGGGACGTTGGAGAGTTTATAGTTCCGATTCCATTTGTTAAACAAGTGAAGTTATCAAATGCTGGTGGGAGGCTTATAATTGCTTCGGATGGCATCTGGGACGCCCTATCATCGGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCCGAGCTCGCAGCTAGGCAAGTCGTGAAGGAAACGTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATAACTCAGCTCAGTCTTCTCCTCCTCCAAAGAAACAAAGCGTTCTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGTTATCGAAGAAACTATCAGCTATCGGTCTCGTGGAAGAACTATTTGAAGACGGCTCTGCCATGCTGGCTGACAGGCTTGGAAGTGTAGAGTTGAGCGGATCAAGACATGACACACCCAGCCTATTCACTTGTGCTGTATGTCAAGTGGATCTTGCTCCAAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGTTCAAAGCCATGGCAAGGCCCTTTCCTGTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCGAGCGGGGTGCGAGTGGCGTAG 1299 48.27 MASREGRRRHHHHHNLVPLAALIGKEVRNERLEKPTIRYGSAAQSRKGEDYFLMITDCQRVPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCVLDTQGGAVSALTIDHRLEDNVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDRDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKETLRTRGLKDDTTCIVVDIIPPDNSAQSSPPPKKQSVLKSLLFRKKSHSSNKLSKKLSAIGLVEELFEDGSAMLADRLGSVELSGSRHDTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8424972 8429748 + CmaCh18G010030.1 Cma18g01003 314341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01003 432 Pfam Protein phosphatase 2C 64 272 IPR001932 -
Cma18g01003 432 PANTHER ALPHABET, ISOFORM E-RELATED 7 432 - -
Cma18g01003 432 SMART PP2C_4 28 298 IPR001932 -
Cma18g01003 432 CDD PP2Cc 37 300 IPR001932 -
Cma18g01003 432 ProSiteProfiles PPM-type phosphatase domain profile. 31 300 IPR001932 -
Cma18g01003 432 SMART PP2C_SIG_2 54 300 IPR001932 -
Cma18g01003 432 SUPERFAMILY PP2C-like 44 300 IPR036457 -
Cma18g01003 432 Gene3D - 38 307 IPR036457 -
Cma18g01003 432 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 7 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01849 Cma-Chr1:12199846 Cma18g01003 Cma-Chr18:8424972 7.55E-180 dispersed
Cma09g00218 Cma-Chr9:936800 Cma18g01003 Cma-Chr18:8424972 0 dispersed
Cma18g01003 Cma-Chr18:8424972 Cma01g01681 Cma-Chr1:11465044 4.44E-26 dispersed
Cma10g01145 Cma-Chr10:8101019 Cma18g01003 Cma-Chr18:8424972 2.72E-179 transposed
Cma11g01247 Cma-Chr11:8283532 Cma18g01003 Cma-Chr18:8424972 0 transposed
Cma18g01003 Cma-Chr18:8424972 Cma04g01495 Cma-Chr4:7596201 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01003 - - csv:101216777 790.415