Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01004 ATGGCGGCGGCTACATTACTGTCGCATTTCGCTATTTGTCTCTGTTTACTCCCTTTTACACATCTTTATGCTTCTTCGAACTCAGATTTTGACGCTTTAATGGCGTTCAAAGTGGCGTCTGATGAAGGGAATAGGCTTACCACATGGAACTCTACTTCGAACCCGTGCGCTTGGAATGGAGTCTCTTGCCTCAGAAACAGAGTCTCGAGGTTAGTTCTTGAGAATCTTGATCTTACAGGCTCTCTTGCACCTCTTACTGGTTTGACTCAGTTACGAGTGTTGAGCCTTAAGCGGAATCGTCTCTCTGGTTCCGTTCCTGATTTCTCCAACTTCACCGCTCTCAAACTCGTGTTTCTCTCGTATAATCAATTTTCCGGCGTTATTCCGGCGTCTTTGATGTCTCTTGTCCGTCTCTACCGTCTTGATCTCTCTCACAATAACTTCACCGGACAGATTCCGGCCTCTGTTAACCGTTTGTCTCATCTTCTTACTCTCCGCCTCGAAGAAAACCGGTTTTCTGGTCCTGTTTTGGAACTGAACCTGCCGAATCTTCAGGATTTCAATGTTTCAGCGAACCGTCTCTCAGGTCAAATCCCTAAATCGTTGTCGACGTTTCCGGCGTCTTGTTTCGGCCAGAACTTGGGTTTGTGTGGATCTCCTCTACAGAGCTGCAATGGCATAGTTACTAACCCGACGGAACCCGGATCCGAAGGAGCCATTGCGTCCCCCATAACACCGCCGCGGAATCTAACAGTTTCATCTTCTCCGACATCGCTTCCCGGAGTTGCGCCGGAAAGCACCCACCACAAAGGCACCGGGAAGATAGGTTCTCTGGCGCTAATCGCTATAATTCTCGGCGATGTATTGGTGTTGGCAGTAGTCTCGCTTCTTCTCTACTGCTATTTCTGGAGAAACTCCTCCGACAAATCCCGAGATAGGAAGGGGCCGAAGCTTCTTGAGAGCGAGAAGATCGTTTACTCGTCGAGTCCATATCCAGCTCAGGCTGGAACAGAGAGGGGTCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCATACAAAGCGATTCTCGACGACGGCAATGTCGTGGCAGTGAAACGGCTGAAAGACGCGCAGGTCGGAGGTAAACGAGAGTTCGAGCAGCACATGGAGGTGCTGGGAAGGTTGAAACATGAACATATTGTAAGCTTGAGAGCTTACTATTTTGCGAGAGAGGAGAAGCTTTTGGTTTATGATTACATGCCCAATGGCAATCTGTTCTGGCTTCTTCATGGAAACAGAGGCCCTGGACGGACGCCGTTGGACTGGACGACGAGGTTAAAGATCGCCGCCGGAGCAGCCAGAGGTCTGACCTTCATTCACAACTCCAGTAAGTTTCTCAGGCTTGTTCATGGCAATGTGAAATCCACTAACATTCTTCTGGATCAATCGGGAAATGCTCGAGTTTCCGATTTTGGACTGTCCCTTTTCACTCCCCCTTCCACTCCTCGATCCAACGGCTACCGTGCGCCGGAGTGCGGCGAAGGTCGGAAACTGACGCAGAAATCCGACGTGTATTCATTTGGGGTTCTACTTCTCGAGCTGTTAACTGGAAAGTGTCCTTCTGTGGTGGAGAATGGTGGGCCAGGAGGCGGTGGATACGGCGGCGTGTTGGATTTGCCGCGGTGGGTTCAGTCAGTGGTGCGGGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATTGAAGAGGAAATGGTGGGGCTGCTGCAGATTGCATTGACTTGTACTTCGGCTTCGCCGGATCAACGGCCGAAAATGATCCATGTGGTGAAGATGATCGATGAGCTTCGTGGGGTGGAGGTGTCGCCGTTCCATGACGGCTCCGACTCGGTGACGGACTCGCCGTCGGTGTCGGAGGGGACTTGCGGCGGCGACGGAGGAGGAGCCAGTAGTCAGGTTGCCGCGAAGCAACGAAAAACAGAGGTTTTGGGTATGGATGTGGATATTATACGATTTTCGATGTGGGTTTGA 2088 51.1 MAAATLLSHFAICLCLLPFTHLYASSNSDFDALMAFKVASDEGNRLTTWNSTSNPCAWNGVSCLRNRVSRLVLENLDLTGSLAPLTGLTQLRVLSLKRNRLSGSVPDFSNFTALKLVFLSYNQFSGVIPASLMSLVRLYRLDLSHNNFTGQIPASVNRLSHLLTLRLEENRFSGPVLELNLPNLQDFNVSANRLSGQIPKSLSTFPASCFGQNLGLCGSPLQSCNGIVTNPTEPGSEGAIASPITPPRNLTVSSSPTSLPGVAPESTHHKGTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWRNSSDKSRDRKGPKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLKHEHIVSLRAYYFAREEKLLVYDYMPNGNLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLTFIHNSSKFLRLVHGNVKSTNILLDQSGNARVSDFGLSLFTPPSTPRSNGYRAPECGEGRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALTCTSASPDQRPKMIHVVKMIDELRGVEVSPFHDGSDSVTDSPSVSEGTCGGDGGGASSQVAAKQRKTEVLGMDVDIIRFSMWV 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8432568 8436336 + CmaCh18G010040.1 Cma18g01004 314342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01004 695 Gene3D Phosphorylase Kinase; domain 1 333 433 - -
Cma18g01004 695 MobiDBLite consensus disorder prediction 246 262 - -
Cma18g01004 695 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 650 - -
Cma18g01004 695 SUPERFAMILY Protein kinase-like (PK-like) 362 632 IPR011009 -
Cma18g01004 695 MobiDBLite consensus disorder prediction 235 268 - -
Cma18g01004 695 Pfam Leucine rich repeat 90 148 IPR001611 GO:0005515
Cma18g01004 695 ProSiteProfiles Protein kinase domain profile. 358 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01004 695 Gene3D Transferase(Phosphotransferase) domain 1 434 646 - -
Cma18g01004 695 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cma18g01004 695 MobiDBLite consensus disorder prediction 642 672 - -
Cma18g01004 695 CDD STKc_IRAK 364 635 - -
Cma18g01004 695 Gene3D Ribonuclease Inhibitor 180 226 IPR032675 -
Cma18g01004 695 Gene3D Ribonuclease Inhibitor 26 179 IPR032675 -
Cma18g01004 695 PANTHER - 24 650 - -
Cma18g01004 695 Pfam Protein tyrosine and serine/threonine kinase 362 631 IPR001245 GO:0004672|GO:0006468
Cma18g01004 695 SUPERFAMILY L domain-like 45 205 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00985 Cma18g01004 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00435 Cma-Chr6:2015651 Cma18g01004 Cma-Chr18:8432568 2.12E-177 dispersed
Cma07g00691 Cma-Chr7:3037128 Cma18g01004 Cma-Chr18:8432568 1.50E-118 dispersed
Cma14g00263 Cma-Chr14:1137576 Cma18g01004 Cma-Chr18:8432568 9.30E-177 dispersed
Cma18g01004 Cma-Chr18:8432568 Cma11g00586 Cma-Chr11:2810031 8.90E-178 dispersed
Cma18g01004 Cma-Chr18:8432568 Cma04g01496 Cma-Chr4:7601930 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69309 PF07714 PK_Tyr_Ser-Thr 3.50E-34 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01004 - - cpep:111802740 1261.51