Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01010 ATGGATTCGATAAATATACGCAGTGGGTCAGGTCAGAACTCCTGCATCGGCGACAGAGCTAGAAACTGCGCGATGTTGCAGGCTTCCATTAACCCGATTCAATCGCCGCCTCCGGCGTTTCATTACAAGACAGCAGGACTCGCATTCCCTTCATCACTTGTCTGCCCCATCAGTCGGCCGTCGCCGACATCGTTACGTCTGCGATCACCCTCAGTAACGAGAAGCTCCATTTCTTCTTCATTTCAACTCAAAGCCGGAAAAGGGATGGATGGCTTCCTAGATGTTGAGCTCAAAGTTCGTGACTATGAGCTGGATCAGTTTGGGGTTGTCAACAATGCTGTTTATGCGAGTTATTGCCAACATGGTCGTCATGAACTGCTGGAAAGCATAGGCCTCAGTCCTGATGCAGTTGCTCGTGATGGCGATGCATTAGCTTTATCAGAATTGTCTTTGAAGTTCCTTGCACCACTTAAAAGCGGAGACAGATTTGTTGTTAAGGTCAGGATCTCGGGGATGTCAGCTGCTCGCTTCTACATCGATCATTTCATTTTCAAGCTTCCAAACATGGAGGTAAGCAATGGAACCATTAATTTTGATATCAGTTTGTTTACCTTGTCTGGATGCCTAGAACCTCGTAACCCATTTCCTGTCCTGTTTTCTTTCCCTAGCCAATCTTGGAGGCAAAGGCTACAGCAGTTTGGCTCAACAAAAGCTATCGTCCAGTGCGTATCCCGCAAGAATTTCAATCCAAGTTTGCTCAGTTCGTTCGGGATCATGACTCGAAGTGATCGACTTTGGGTCGATATCGTTGAGACCACTGCTACTCAAATAGCGTGGTACATCTTTACACAACATGAATATCAGCCTGATTCACTTAGTTATGAGATATTTCTACCACTAATCCCAAACTCTTGTCCCTTCGCCTCTTTTTTGCAACGTCTCTCGCCTATCGACATTGGCTATGGCAACTCCCAAATGCTCTCCCCACGAACATTTGATCTCAGTACTAACACTGCTATTCAACCAAACCCTTCTCGAATGGTTGGGTTTATAGTCTATGAGATGAAAGTTGGTGATTGTGAGTTGGATCAGTACGGTGTCGTCAATAATGCTGTTTATTCTGATTATTGTTACTGCGCTCATCACGAATGGTTAAATAGTATAGATGTGAGTCTTGATGCAATTACCTGTGACGGGGAGTCGTTAGCTCTATCAGAGACGTCTTTGAAGTTCCTTTCGTCACTTAGAAGTGGAGGTCGATTTGTTCTTAAGATGAGGTTTTTGGACATCTCAAAAGCTCGCATCTACATCGAGCACAAAATTTTCAAGCTACCAAATATGGAGGCAATCTTAGAGGCACAGGTGACGAGAGTTTGGCTTAATAAAAATCATCGTCCAATGCAGATCCCACAAAAATATTTATCCAAATTTGCTCAATTTATTCATGATCATAATCAGTCTAACAGATCAACGCGGACACTCAAGAGCTTAGGCTTCACTTTCTGGGGTTTCACAGTTCTTCCTCTTCCACCCTTTGCAGAAATGGCTGAAGCAAAGAAATCAAACCCTGATGTGGAGAAGAGGGTGATGGTGGCCGTAGACGAGAGTGAGTGTAGCTACTATGCTCTAATCTGGGTACTGGAAAATCTTAAACAATCCATTGCCGACTCGCCTCTTTTCGTCTTCACGGCTCTACCTCCGCCCACCAGTTATACCTCCGGTGCCGGTGCCTCTCTCGGCCTCGCGCGATCGTATTTCCCTGTTGCATCCAATACGGAGTTGGCTCATACGCTTCAAGAGAATGATAAGAAAGTTAGATGCGGCATCCTAGAGAAAGCAAAAGATATCTGTGCTGAAAGAGGGGTGGCTGCAATATCCATCACAGAGGTTGGGGAACCTGGAAGGATGATATGTGATACAGTTGAAAAGCTCAATATAAATTTGCTTGTTTTGGGTGATCATGGCATTGGGAGAATTAAGAGAGCTCTGATCGGGAGTGTGAGCAACTACTGTGTTCAAAATGCCAAGTGCCCTGTCCTTGTCGTGAAGAAACCATAG 2058 45.04 MDSINIRSGSGQNSCIGDRARNCAMLQASINPIQSPPPAFHYKTAGLAFPSSLVCPISRPSPTSLRLRSPSVTRSSISSSFQLKAGKGMDGFLDVELKVRDYELDQFGVVNNAVYASYCQHGRHELLESIGLSPDAVARDGDALALSELSLKFLAPLKSGDRFVVKVRISGMSAARFYIDHFIFKLPNMEVSNGTINFDISLFTLSGCLEPRNPFPVLFSFPSQSWRQRLQQFGSTKAIVQCVSRKNFNPSLLSSFGIMTRSDRLWVDIVETTATQIAWYIFTQHEYQPDSLSYEIFLPLIPNSCPFASFLQRLSPIDIGYGNSQMLSPRTFDLSTNTAIQPNPSRMVGFIVYEMKVGDCELDQYGVVNNAVYSDYCYCAHHEWLNSIDVSLDAITCDGESLALSETSLKFLSSLRSGGRFVLKMRFLDISKARIYIEHKIFKLPNMEAILEAQVTRVWLNKNHRPMQIPQKYLSKFAQFIHDHNQSNRSTRTLKSLGFTFWGFTVLPLPPFAEMAEAKKSNPDVEKRVMVAVDESECSYYALIWVLENLKQSIADSPLFVFTALPPPTSYTSGAGASLGLARSYFPVASNTELAHTLQENDKKVRCGILEKAKDICAERGVAAISITEVGEPGRMICDTVEKLNINLLVLGDHGIGRIKRALIGSVSNYCVQNAKCPVLVVKKP 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8461548 8473468 + CmaCh18G010100.1 Cma18g01010 314348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01010 685 CDD USP_Like 528 682 - -
Cma18g01010 685 Pfam Thioesterase-like superfamily 362 443 - -
Cma18g01010 685 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 350 486 IPR029069 -
Cma18g01010 685 Gene3D Hotdog Thioesterase 78 196 - -
Cma18g01010 685 Gene3D Hotdog Thioesterase 342 483 - -
Cma18g01010 685 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 527 684 - -
Cma18g01010 685 Pfam Thioesterase superfamily 107 190 IPR006683 -
Cma18g01010 685 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 89 188 IPR029069 -
Cma18g01010 685 Gene3D HUPs 522 685 IPR014729 -
Cma18g01010 685 CDD 4HBT 95 185 - -
Cma18g01010 685 PRINTS Universal stress protein signature 661 683 IPR006015 -
Cma18g01010 685 PRINTS Universal stress protein signature 526 544 IPR006015 -
Cma18g01010 685 PRINTS Universal stress protein signature 643 655 IPR006015 -
Cma18g01010 685 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 345 484 - -
Cma18g01010 685 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 60 191 - -
Cma18g01010 685 CDD 4HBT 352 461 - -
Cma18g01010 685 Pfam Universal stress protein family 527 683 IPR006016 -
Cma18g01010 685 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 345 484 - -
Cma18g01010 685 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 60 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01010 - - - cmax:111467362 341.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01092 Cma-Chr17:7695658 Cma18g01010 Cma-Chr18:8461548 4.17E-21 dispersed
Cma18g01010 Cma-Chr18:8461548 Cma14g01591 Cma-Chr14:11950117 6.40E-19 dispersed
Cma18g01010 Cma-Chr18:8461548 Cma12g00194 Cma-Chr12:897180 1.09E-25 transposed
Cma18g01010 Cma-Chr18:8461548 Cma17g01091 Cma-Chr17:7693870 1.25E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g325 . . . . . . . . . Cmo18g01019 . Cma18g01010 . Car18g00931 . Cpe09g00313 . Bhi07g01306 . . Lac13g0512 Hepe01g1177 . . Cla05g02287 Cam05g2460 Cec05g2480 . Clacu05g2455 Cmu05g2316 Cre05g2434 Cone13ag0822 Cone19ag0828 . . Lsi04g00242 . . Cme10g00245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01010 Cma_Chr18 FPKM 2.333658 1.693528 2.437861 3.028463 3.626161 3.928371 3.818006 4.638961 3.736075 3.842019