Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01019 ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTACGGTCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCGAACACCTCCGCCCGGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGTTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTTGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGACATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGGAACCGGTTCAAAAAGCCCGACAACCGGACCAAATCCAAACCCGGACCGGGTCGTGAATTGGGAAGTGGGTCGAATGTGGAGGTGATTGAGATAGACCGAATGGCGGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGCATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA 660 54.85 MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8518054 8519272 + CmaCh18G010190.1 Cma18g01019 314357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01019 219 MobiDBLite consensus disorder prediction 146 174 - -
Cma18g01019 219 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cma18g01019 219 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cma18g01019 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 182 - -
Cma18g01019 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00811 Cma-Chr14:4107612 Cma18g01019 Cma-Chr18:8518054 1.23E-66 dispersed
Cma18g01019 Cma-Chr18:8518054 Cma02g00024 Cma-Chr2:124732 1.57E-10 dispersed
Cma10g00235 Cma-Chr10:1053099 Cma18g01019 Cma-Chr18:8518054 1.77E-61 wgd
Cma11g00267 Cma-Chr11:1358315 Cma18g01019 Cma-Chr18:8518054 6.52E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36809 PF03195 LOB 5.80E-23 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01019 - - cmax:111467594 444.891