Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01020 ATGATGACGAGGAAAAGTGTGGAGAAAACAGCTGAGGGTGGTAAGACTGCCAGAGCCTGCGATAGCTGTATCAGCAAGCGGGCTCGGTGGTACTGTGCCGCCGATGATGCTTTTCTGTGCCAAGCTTGTGATGCTTTGGTTCACTCCGCCAATTCCTTGGCCCGTAGGCACGAGCGTGTTCGTCTTCAAACTGCCTCTTTCAGACCCTCCTCAGATAAGTCCTCTGCTGCCTCATGGCATCAGGGCTTCACTAGAAAGCCACGGTCGCCTCGAATGGGAAAGGCTGCTCTGGCAAGGAAGCCATCTCCTCAGGTACCGGAGGTGAATGCTAAAGAAGAAACTGAAGATCAGGAACAGTTCTTTCTTCATCGGGTTCCTGTTTTGGGATTCGATTCAAATGTTGGTGATTTGGCTAGTTTTGTTGGGGAAAAAGAAAATTCAAATGGGTATCTCTCGTACGATATGGATCCTGCTGAATTTGCAGCTGATGTTGAAAGTTTGTTGGGTAACTCACATACTGAGTGCTTTGACATGGAAGAACTGGGGCTGGGAGCTTCCCAAGACGACTGGACGACAAAGGATGATAGCTCTTTCAACAGCTGCGAAGTTATTAAGATTGAACCAGATGAGATAGAGGAATTAACTCCGATGATGCTCGGTGTTGAGACCGATCCAATGAGGGAGCCATTTGATCTGAACTTTATGGACTTTGGCGACAATCCATCGTGCGATAAGGAAGAGAAGACGATTGTCGAAGTCATGGCATTGGCGAAGAACCGTGAATTCGAGGTGGAAAAAGAGACGAAGATTGCAAGAAACAAAAAGAAAGTATCATTGAGTTTGGATAGTGAAGCAGTGATAATAGCATGGGGGAGCAGAGGAACACCATGGACATCCGGTGAACGGCCGAATGTCGACCTCGATTATTACTGGCCGGATTACATGGGTATGTGTGAGAGTGGACATTATTATCAGGCTTACGGGGAGGTTGGCGGCGGAATCAGGCGACAAGCGGCTGCCGGAGTTGAAGGAGAGAGAGAAGCAAGAGTGTCGAGATACAGAGAGAAGAGAAGGACGAGATTATTTGCAAAAAAAATAAGATACGAAGTTCGGAAACTGAACGCAGAGAAGAGACCGAGAATGAAAGGGAGGTTTGTGAAGAGATCCTCTTGCTTTGCGCCGCCACCTTTCCCTTTGTTTAATTAA 1206 47.6 MMTRKSVEKTAEGGKTARACDSCISKRARWYCAADDAFLCQACDALVHSANSLARRHERVRLQTASFRPSSDKSSAASWHQGFTRKPRSPRMGKAALARKPSPQVPEVNAKEETEDQEQFFLHRVPVLGFDSNVGDLASFVGEKENSNGYLSYDMDPAEFAADVESLLGNSHTECFDMEELGLGASQDDWTTKDDSSFNSCEVIKIEPDEIEELTPMMLGVETDPMREPFDLNFMDFGDNPSCDKEEKTIVEVMALAKNREFEVEKETKIARNKKKVSLSLDSEAVIIAWGSRGTPWTSGERPNVDLDYYWPDYMGMCESGHYYQAYGEVGGGIRRQAAAGVEGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSCFAPPPFPLFN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8520344 8521825 - CmaCh18G010200.1 Cma18g01020 314358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01020 401 Coils Coil 400 401 - -
Cma18g01020 401 Pfam CCT motif 346 388 IPR010402 GO:0005515
Cma18g01020 401 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 394 - -
Cma18g01020 401 MobiDBLite consensus disorder prediction 64 108 - -
Cma18g01020 401 SMART bboxneu5 15 62 IPR000315 GO:0008270
Cma18g01020 401 CDD Bbox1_BBX-like 19 62 - -
Cma18g01020 401 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 394 - -
Cma18g01020 401 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Cma18g01020 401 MobiDBLite consensus disorder prediction 64 82 - -
Cma18g01020 401 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
Cma18g01020 401 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01020 - - - csv:101212689 653.669
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02049 Cma18g01020 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02663 Cma-Chr4:18096794 Cma18g01020 Cma-Chr18:8520344 2.23E-24 dispersed
Cma12g00912 Cma-Chr12:7005554 Cma18g01020 Cma-Chr18:8520344 2.29E-18 dispersed
Cma15g00985 Cma-Chr15:5625287 Cma18g01020 Cma-Chr18:8520344 1.51E-91 dispersed
Cma18g01020 Cma-Chr18:8520344 Cma05g00713 Cma-Chr5:3799116 1.36E-12 dispersed
Cma13g00041 Cma-Chr13:412408 Cma18g01020 Cma-Chr18:8520344 2.62E-14 transposed
Cma10g00236 Cma-Chr10:1055323 Cma18g01020 Cma-Chr18:8520344 1.51E-82 wgd
Cma18g01020 Cma-Chr18:8520344 Cma04g01508 Cma-Chr4:7652302 0 wgd
Cma18g01020 Cma-Chr18:8520344 Cma04g02049 Cma-Chr4:13476827 9.76E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36810 PF00643 zf-B_box 3.90E-07 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01020 Cma_Chr18 FPKM 2.234559 3.187225 0.0 0.384137 10.801273 11.217896 11.451842 6.483275 7.177277 7.073124