Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01024 ATGCCAGAGTACTGTGTGACCGGCGGCACTGGCTTTATAGCCTCCAACTTGGTCAAGACATTGCTCGAGAACGGTCACCATGTTCGCACCACCGTTAGAAACCCAGGAGACGAACGAAGTGTCGGGTTTCTGTGGGAGTTCGATGGAGCTAAGGAGAGGCTGAAGATAGTCAAAGCTGACTTGCTTGAAGAAGGTAGCTTTGATGAGGCCATTCAAGGAGTTGATGGGGTCTTCCACACTGCTTCACCTGTCATTGTTCCCTACAATAACAACATCAAGGCAACTCTGATTGATCCATGTATAAATGGTACGAAGAACGTACTAAATTCGTGTCTAAAAGCGAACAGCGTGAAACGAGTAGTGCTCACCTCGTCCTGCTCTGCAATTAGATATCGTTATGACGTCCAGCAACTCTGCCCTCTCAATGAATCGCATTGGTCCGATCCCGAGTATTGCAAGAGCCATAATCTTTGGTATGCATTTGCAAAGACTTTGGCAGAGAAAGAGGCTTGGCGTTTGGCAGAAGAACATGGAATGGATCTAGTTGTGGTGAACCCATCTTTTGTTATTGGTCCTTTGCTTACACCAAAACCAACCAGTACTCAGCATCTCCTACTCACCATCATCAAAGGTGAAAGTGGCGAGTATCCAAACTGCACGTTGGGGTTCGTGCACATAGACGACGTGGTAGCAGCGCACATACTAGCAATGGAACATCCAAAAGCATCAGGCAGGATCATATGTTCAAGCACAGTAGCTCACTGGTCAGAGATCATCGCAATGCTCAGAATCAAGTATCCATCCTACCCATTTGAAACCAAATGCAACAACGCTCAGAAAGGAGATAGCAACCCTCATAATATGGACACCAGAAAGATATCTAACCTGGGATTCTCCGCTTTCAAGACGCTCGAACAAATGCTTGATGATTCGATCAAGAGTTTCCGAGACAGAGGATTTCTTTGA 966 46.27 MPEYCVTGGTGFIASNLVKTLLENGHHVRTTVRNPGDERSVGFLWEFDGAKERLKIVKADLLEEGSFDEAIQGVDGVFHTASPVIVPYNNNIKATLIDPCINGTKNVLNSCLKANSVKRVVLTSSCSAIRYRYDVQQLCPLNESHWSDPEYCKSHNLWYAFAKTLAEKEAWRLAEEHGMDLVVVNPSFVIGPLLTPKPTSTQHLLLTIIKGESGEYPNCTLGFVHIDDVVAAHILAMEHPKASGRIICSSTVAHWSEIIAMLRIKYPSYPFETKCNNAQKGDSNPHNMDTRKISNLGFSAFKTLEQMLDDSIKSFRDRGFL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8545289 8547942 + CmaCh18G010240.1 Cma18g01024 314362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01024 321 PANTHER TETRAKETIDE ALPHA-PYRONE REDUCTASE 2 1 320 - -
Cma18g01024 321 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 320 - -
Cma18g01024 321 CDD FR_SDR_e 4 298 - -
Cma18g01024 321 Gene3D - 2 321 - -
Cma18g01024 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 319 IPR036291 -
Cma18g01024 321 Pfam NAD dependent epimerase/dehydratase family 5 243 IPR001509 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01024 - - - cmax:111467542 662.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01071 Cma-Chr11:5872038 Cma18g01024 Cma-Chr18:8545289 4.07E-07 dispersed
Cma17g00896 Cma-Chr17:6791765 Cma18g01024 Cma-Chr18:8545289 2.74E-84 dispersed
Cma18g01024 Cma-Chr18:8545289 Cma20g00694 Cma-Chr20:3180653 1.02E-93 dispersed
Cma19g00697 Cma-Chr19:7165039 Cma18g01024 Cma-Chr18:8545289 9.19E-07 dispersed
Cma18g01024 Cma-Chr18:8545289 Cma01g00182 Cma-Chr1:802536 3.67E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g304 . . . . . . Bma14g01708 . . Cmo18g01034 . Cma18g01024 . Car18g00943 Sed06g1887 Cpe09g00299 . Bhi07g01326 Tan04g0859 Cmetu10g0120 Lac13g0491 . . . Cla05g02302 Cam05g2475 Cec05g2498 Cco05g2540 Clacu05g2470 Cmu05g2332 Cre05g2449 Cone13ag0832 . . . Lsi04g00257 Csa05g02609 Chy10g01144 Cme10g00263 . Blo11g00754 Bda07g01535 . Bpe11g01623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi13g908 . . . . . . . . . . . Cma18g01024 . Car18g00943 . . Cpe09g00476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007652 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01024 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 0.313794 0.22449 0.0 0.0 0.0 0.0