Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01025 ATGTCGGCTTTGTTCATATTGGCAGTCATTGGGGCTCTGTTGCAGCTCTGGTTTTCTTCTTCTGCTTTCTTCTCACTCTGCTGCTTCTGGCAGAGGACTTGTTCTGGAGTAAAATTCTCGTGGACTTTTCGTATAAAGCAATTTCTTCTTCGTTTCTCCACCTTACACTTCCGCTGTTTTGATTCTCAGAAATCTTCCATTGTTTCCGTTCGATTATTCATAAATTATTCTGTTCTTGTTCTTCTTAATCTGTCGTACTACTCTCTGATGCCGCATCCTAATCAGAGAAGTGTTAGCGACAGAAAGTTCAAACAGTCGACGAATTTCTCTGGAGATCCGAAAATGAGGAGAAAAGTTCGTATAATCTGTTATGATCCTGATGCAACGGACGCGTCTTCAAGCGAAGATGAAGGAGAAGTATACGGAAGATTAAGAAGAAGATTGAACAAAAAAAACCGAATCATACACGAAATCGACCTGCCTACGCCGATGAACGCTCCCGAATCTAAGAGTTCTAAGAGCAGCAACAATGGAAACAAATACCCTCAGTCTCGAAGATTATCGTCTTCGAAATACAAAGGTGTGAGACAGAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGTTCAAAAGAAGCCGTGTTTGGCTAGGTACTTACGACAATGCTGAAGAAGCTTTTCAAGCCTATGAATCGAAGCGGTTGCAGTTTGAAGCTATGGCAGCGGAAATGGCTTCTGGCAACGGCACTGTGTCAGATCAGACTGATTCTTCGGTGAGCACGACGGAGACCACCATGTCACGCACATCTCCGCCGTCTGTTCTCGAATGGAACGATTCATCTTCTCAAAGCCGAGAGGGAGATTCAATCAAAGAAAAAACAGACACAAATATGCACTATCTTCAAGAAGCGGATCTGGGGAATGAATTTGGTTGGAGTCTGGCTGATGGAATCGGGATGTTCTTGGACGATTTTGCAAGTCTAGACAACACCCATTTTTTTGTGTTTGCCGATGCTGATGATGAACCTTGCTTCCTTCCAAATTTTGATTGTGATCATATATGGAATGCTGAGATTTCTAGTTGGCTTGATGAACCGATCAACATAACTTGTTCATAA 1122 43.32 MSALFILAVIGALLQLWFSSSAFFSLCCFWQRTCSGVKFSWTFRIKQFLLRFSTLHFRCFDSQKSSIVSVRLFINYSVLVLLNLSYYSLMPHPNQRSVSDRKFKQSTNFSGDPKMRRKVRIICYDPDATDASSSEDEGEVYGRLRRRLNKKNRIIHEIDLPTPMNAPESKSSKSSNNGNKYPQSRRLSSSKYKGVRQRPWGKWAAEIRDPFKRSRVWLGTYDNAEEAFQAYESKRLQFEAMAAEMASGNGTVSDQTDSSVSTTETTMSRTSPPSVLEWNDSSSQSREGDSIKEKTDTNMHYLQEADLGNEFGWSLADGIGMFLDDFASLDNTHFFVFADADDEPCFLPNFDCDHIWNAEISSWLDEPINITCS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8548170 8549426 - CmaCh18G010250.1 Cma18g01025 314363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01025 373 Pfam AP2 domain 190 240 IPR001471 GO:0003700|GO:0006355
Cma18g01025 373 SUPERFAMILY DNA-binding domain 190 238 IPR016177 GO:0003677
Cma18g01025 373 MobiDBLite consensus disorder prediction 247 291 - -
Cma18g01025 373 CDD AP2 190 231 IPR001471 GO:0003700|GO:0006355
Cma18g01025 373 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700|GO:0006355
Cma18g01025 373 PRINTS Ethylene responsive element binding protein signature 214 230 IPR001471 GO:0003700|GO:0006355
Cma18g01025 373 MobiDBLite consensus disorder prediction 248 285 - -
Cma18g01025 373 PANTHER DNA-BINDING DOMAIN 109 298 IPR044808 GO:0003700|GO:0009873
Cma18g01025 373 MobiDBLite consensus disorder prediction 155 193 - -
Cma18g01025 373 SMART rav1_2 191 245 IPR001471 GO:0003700|GO:0006355
Cma18g01025 373 MobiDBLite consensus disorder prediction 165 190 - -
Cma18g01025 373 Gene3D AP2/ERF domain 190 246 IPR036955 GO:0003700|GO:0006355
Cma18g01025 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119-LIKE 109 298 - -
Cma18g01025 373 ProSiteProfiles AP2/ERF domain profile. 191 251 IPR001471 GO:0003700|GO:0006355
Cma18g01025 373 Coils Coil 221 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01025 - - - cmax:111467540 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00039 Cma-Chr18:152596 Cma18g01025 Cma-Chr18:8548170 1.65E-26 dispersed
Cma18g01025 Cma-Chr18:8548170 Cma18g01294 Cma-Chr18:9977179 2.74E-26 dispersed
Cma15g00903 Cma-Chr15:4651097 Cma18g01025 Cma-Chr18:8548170 2.52E-08 transposed
Cma13g01027 Cma-Chr13:7865865 Cma18g01025 Cma-Chr18:8548170 4.92E-24 wgd
Cma15g00902 Cma-Chr15:4650006 Cma18g01025 Cma-Chr18:8548170 3.11E-57 wgd
Cma18g01025 Cma-Chr18:8548170 Cma04g01516 Cma-Chr4:7672234 4.98E-108 wgd
Cma18g01025 Cma-Chr18:8548170 Cma04g02050 Cma-Chr4:13510179 1.32E-59 wgd
Cma18g01025 Cma-Chr18:8548170 Cma04g02050 Cma-Chr4:13510179 1.32E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g303 . Blo16g01062 Bda01g02077 Bda11g01147 Bpe13g01346 Bpe10g00938 . Bma15g00086 Cmo04g01583 Cmo18g01035 . Cma18g01025 Car04g01564 Car18g00945 Sed11g1612 . . Bhi07g01328 Tan04g0862 Cmetu03g2262 Lac13g0490 Hepe01g1195 . . Cla05g02303 Cam05g2476 Cec05g2499 Cco05g2541 Clacu05g2471 Cmu05g2333 Cre05g2450 . . Cone13ag0288 . Lsi04g00259 Csa05g02608 Chy10g01143 Cme10g00264 . . . Bda11g01147 . Bpe02g02269 Bma01g00167 Bma06g00759 . . Cmo15g00939 . . . Car15g00843 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001455 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 5 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36811 PF00847 AP2 6.70E-13 CL0081 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01025 Cma_Chr18 FPKM 0.229947 0.0 0.164345 0.0 1.943767 2.578099 1.861052 0.322659 0.536227 0.204838