Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01028 ATGAAGATTTTCGTCAAGACTCTCAAGGGCTCACACTTCGAAATCGAAGTGCAGCCTCAAGATATGGTTGCTGATGTGAAGAAAAAAATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAGGGAAAAGTCCTTAAAGATGGCACAACACTGGATGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATCATGTTAACAAAGAATAAAAGTTCATCGGGTGGGACGTCTTCTACCACACAAGCTGCACCAGTGTCAAAGGCACCACAGAACACTGCCCCTGCACCTGCTGCAACTCCAGTCTCAACATCTGAAGTTCCTCTGCCAACTTCTGCACCTCCGGCTACTATTACCACCTCTTCTCTTCCAGCTCCCGCTCCAGCGCCAGCTCAGGCACCTGCAACCACTGTCTTGCCAGAATCTGATGTCTACAGCCAAGCAGCTTCTAACCTGGTCGCGGGCAGTAACTTGGAGGAGACTATCCAACAGATTCTTCTCATGGGCGGAGGGATTTGGGATAGGGACACTGTTGTTCAAGCTCTTCGTGCTGCTTACAATAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGCATACCTGAACAAGTTGAAGTTCCACCTGCTGCTCATGTTCCGTCTACTGTTCCAGTGACCAACCCTTCCGCTCAACCTGCACAGCCTGCCCAACCTGCGTCTGCGACAGCCACTGGTCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTACCTAATTTAGCTTCCGGAGCCGTTAGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCTATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTTATTAGACTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCTCTTGAAGGAGAAGGGAATGTACTTGGGCAGCTTGCTGATGCTATGCCGCAGGCTATAACTGTAACCCCAGAGGAACGGGAAGCCATTCAACGGCTTGAGGATTTAGGTTTCGACAGAGCTCTAGTGGTGGAGGTTTTCTTCGCCTGCAACAAGAACGAGGAAATGGCTGCGAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAA 1197 47.2 MKIFVKTLKGSHFEIEVQPQDMVADVKKKIETVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVAENSFIVIMLTKNKSSSGGTSSTTQAAPVSKAPQNTAPAPAATPVSTSEVPLPTSAPPATITTSSLPAPAPAPAQAPATTVLPESDVYSQAASNLVAGSNLEETIQQILLMGGGIWDRDTVVQALRAAYNNPERAVDYLYSGIPEQVEVPPAAHVPSTVPVTNPSAQPAQPAQPASATATGPNANPLDLFPQGVPNLASGAVSSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNVLGQLADAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8562492 8569422 + CmaCh18G010280.1 Cma18g01028 314366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01028 398 Pfam UBA/TS-N domain 351 386 IPR015940 -
Cma18g01028 398 Pfam UBA/TS-N domain 165 203 IPR015940 -
Cma18g01028 398 PRINTS DNA repair protein Rad23 signature 297 319 IPR004806 GO:0006289
Cma18g01028 398 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Cma18g01028 398 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Cma18g01028 398 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Cma18g01028 398 SMART CBM 269 312 IPR006636 -
Cma18g01028 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Cma18g01028 398 SUPERFAMILY XPC-binding domain 268 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cma18g01028 398 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 394 - -
Cma18g01028 398 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Cma18g01028 398 MobiDBLite consensus disorder prediction 78 143 - -
Cma18g01028 398 TIGRFAM rad23: UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Cma18g01028 398 Gene3D - 158 208 - -
Cma18g01028 398 Gene3D - 1 80 - -
Cma18g01028 398 Gene3D - 262 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cma18g01028 398 SMART ubq_7 1 75 IPR000626 GO:0005515
Cma18g01028 398 MobiDBLite consensus disorder prediction 224 249 - -
Cma18g01028 398 Gene3D - 343 390 - -
Cma18g01028 398 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Cma18g01028 398 MobiDBLite consensus disorder prediction 78 133 - -
Cma18g01028 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 394 - -
Cma18g01028 398 Pfam XPC-binding domain 271 326 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cma18g01028 398 SUPERFAMILY UBA-like 332 393 IPR009060 GO:0005515
Cma18g01028 398 SUPERFAMILY UBA-like 162 213 IPR009060 GO:0005515
Cma18g01028 398 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Cma18g01028 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 163 206 IPR015940 -
Cma18g01028 398 CDD Ubl_Rad23 1 74 - -
Cma18g01028 398 SMART uba_6 351 388 IPR015940 -
Cma18g01028 398 SMART uba_6 165 205 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01028 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 618.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01028 Cma-Chr18:8562492 Cma18g00790 Cma-Chr18:6975048 1.04E-07 dispersed
Cma14g01045 Cma-Chr14:5496262 Cma18g01028 Cma-Chr18:8562492 7.67E-139 transposed
Cma18g01028 Cma-Chr18:8562492 Cma04g01536 Cma-Chr4:7780074 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01028 Cma_Chr18 FPKM 36.348217 41.988129 34.807827 35.950371 41.644184 36.996014 41.489689 27.250637 27.724566 27.489395