Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01030 ATGGCTAACGACGCTACTCACCGGAAGCACCGCCGATCTGCTTCCGATGAGGAGGAGGAGAAGTCCTCGAAGCGTCATAAGCATCGTCATCATCGCCGCCACCACCACAGACATCGTCACGGTAGCAATAAGAACGAAGAAGAAAGCTATCGTGACCAGGACGATAGTGTTCCTCCTGTTGCTAACCGTAGATCTCGGCTTGAAGATGATGTGGAGGAAGGGGAAATTCTCGAAGAGGATGAGTCTGGCGTTCGCGAGAATGAGAGTGCGATGAAGGAGGCGGATGTGGAATATGGGGAAATTGAAGCTGATGGAAATTCTGATAGAGCTGATCGGTCCATTGTGGAGCATTATTCGGTGGATGGATCATCTAATACCGAGGCAAATTTAACTGTGAAAAAGGGAGCAGGAATCTGTCCTCAAGATCAGAAGATGTCGAAAGAGAAGAATAAGTTAATTAATTTAGTGGACAAAGATGGTTATTATCTAAAAAAGGACTTAGATGAGGAAAGCACGACTTTCTACCAAACTAACAGTGGCCATAAACATGGCAATGATGTTAGCTTTTCCAGAAGTGAAGTGACTGGAACTAAATACGGCGATTTTGAACCCTGTCTAGAGGGTCGTAACAAAAGTGAATTTGATCAAGGATTTCTTGAGTTAGATGAGAGTCGGCACAAACAAATGTCATCTTTTTCCAAAGGTGGCAGTATGAAAATAAGCGACATTGACAATAAAAAAGTGGTAACAGACAGAAGCACCTTGGGGAATTCAAAAAGGCCACAGTTGGAAAGGGCTGAAGATAAGTCCCAGGATTTTACGCCATCAACATCTCATGATCGATTCATTGATGCATCAGATTGTAGGAGTAGATCAAGGTCAAATTCTCACTTCAGGGGGCAATCTCAGTCTCGTGAAACAGCAGAAGAGGAGGTGGAATCCAAGAGGAGTCCTCATCGTGGTTTAGATCGTTTGGGATTTGATGAGTATGCTAGGGGGGAGGGAAGGCATCGAAGCAGGGATACAAAGGACAGAGGGAGAAGTAAGATAGAGGTGGACAGGGACTGGTCAAAGGAAAAAGAACGGGGAAAAAGCAAAGATAAAAATATTGAGAGAGATAAGCACAAGTTTGATGAAAGAGAAAGAGGAAGGAGTAGGGATGGAAGGAAGGAGGTAGAACGAAATAGGAGTAGGGAAAGAGAATTGGATAGAGATAGGAGGAGGGAAAAGGATGTGGAAAGAGACAGGAGAGTGAAGGGAAGGGATCGGAGTAGGGAAAGGGAGGCAGAAAGAGATAGAAGAGTGGATAAGGAAAGAGATTGGAGTAGGGAAAGAGAGGTAGAGAGGGATAGAAGAGCAGAGAAGGAAAGATGTAGGAGCACAGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGACAAAGAAGTGGACTGGGATGGGAGAAGGGATAGGGACAGAGCTCGGAATGATGATAAGGAGGCTGAATATAGTGATCGAAACAGAGACAAGGAAAGGGTGAGGGAGATGTCAAAGGACCGGTTTAGGGACAAAGAATCAGATAGAGAGAGACGAGATGATAGAAATAAAAATAAAGCCAGTGATATTTTAAGTAGTAAGGATAAGTATGGGAACCTTGAACATGGCTATACTAAAGTTTCTAGTAAGCAGTCTAGACGTTATGAGAATGAATCTGGTCAGAATGGAGGAAGAAATGCTTATGAAAAGCATGGTAGTTTTAAGAAAAATGCTCTTGAAGGAGGCGAAGACAATCTAATGAGTGATGACGTTGAAGAGGAAGAGGATGAGGACATGTCATTTCAATTTGCTGATCAAGAAGAGGAGTACCTTAACAGAATCAAGGAGGAGAGTAGAAGGAGGAGTCGAGCAATCTTAGAAAAATACAAGTGTCAGCAGTTAGAGAAACAAGTAAAGCCTTCTTCGAAGGAATCTGAGAAAGATAAGGATTCCACAGACGATTCTTCTCAATCAGAAGCTGGTGCTCATGCTATTCCAGACTTGGTTGATGGTGTGGTGGATGATAGTGTTGCTGATTCATCGTTTGTTGTGGAAAAATCACCACAACAAAATGGAATAGCTGCGTCTGATAAAACTGCTGGTACCAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGAATATTCTGTGACGATATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGAGATGGTTTGCGTATAGAGAGGAGTGGTCTTCATGACAATTGGGACGATGCAGATGGATATTATAACTATCGATTTGGTGAAGTCCTTGATGGTCGGTATGAAATTGCTGCTGCTCACGGCAAAGGTGTCTTTTCAACTGTAGTCCGTGCCAAGGATCTCAAAGGTGGTCATGATGAACCAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTTTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTACATATGAATCTACGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAATTGTGGTGTTCTACATTGCGACATAAAGCCGGATAATATGCTGGTCAATGAGGGCAAAAATGTGCTGAAGCTTTGTGATTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAATTACCCCATACCTTGTTAGCCGGTTTTATCGTGCCCCTGAAATAATTTTAGGGCTGCCTTATGACCATCCAATGGATATCTGGTCTGTGGGTTGCTGTTTGTACGAGCTGTCTACAGGAAAAGTCCTTTTTCCAGGTCCTTCTAACAATGACATGCTGCGCCTGCACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTTCGCAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTTACTAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTTGACAAAATTTTTGTATTGGATCCAGAAAAAAGGATGACAGTATCACAAGCATTGAACCATCCGTTCATCACTGGCAATCTTATTTGTGATGACCTAAGCTTCTGGCACAATTATGGGATGATTGAATTCAGAAGGGGTCATATTGGTCAGGAGTGGCGGGTTCTTTCAGTGGAATGTACTGTTTCTATTGATGCCTGCTTCTGCTCTGAGAGAACCTTCCAGTGCTTGAGTGATTTAGAGGCACTCAGAAGAAGTAGTGTTGCAGGCAAACTTCCCATCATCCCCATTCTCTTGTCTTGGACATATCTAAGAGTGCCTTACTTTTATCGTTGA 3552 42.74 MANDATHRKHRRSASDEEEEKSSKRHKHRHHRRHHHRHRHGSNKNEEESYRDQDDSVPPVANRRSRLEDDVEEGEILEEDESGVRENESAMKEADVEYGEIEADGNSDRADRSIVEHYSVDGSSNTEANLTVKKGAGICPQDQKMSKEKNKLINLVDKDGYYLKKDLDEESTTFYQTNSGHKHGNDVSFSRSEVTGTKYGDFEPCLEGRNKSEFDQGFLELDESRHKQMSSFSKGGSMKISDIDNKKVVTDRSTLGNSKRPQLERAEDKSQDFTPSTSHDRFIDASDCRSRSRSNSHFRGQSQSRETAEEEVESKRSPHRGLDRLGFDEYARGEGRHRSRDTKDRGRSKIEVDRDWSKEKERGKSKDKNIERDKHKFDERERGRSRDGRKEVERNRSRERELDRDRRREKDVERDRRVKGRDRSREREAERDRRVDKERDWSREREVERDRRAEKERCRSTDREGNRDRRREREKDRSKDKEVDWDGRRDRDRARNDDKEAEYSDRNRDKERVREMSKDRFRDKESDRERRDDRNKNKASDILSSKDKYGNLEHGYTKVSSKQSRRYENESGQNGGRNAYEKHGSFKKNALEGGEDNLMSDDVEEEEDEDMSFQFADQEEEYLNRIKEESRRRSRAILEKYKCQQLEKQVKPSSKESEKDKDSTDDSSQSEAGAHAIPDLVDGVVDDSVADSSFVVEKSPQQNGIAASDKTAGTKGLGEGTPKAEGSDGIFCDDIFGETPAAVRKMGKGDGLRIERSGLHDNWDDADGYYNYRFGEVLDGRYEIAAAHGKGVFSTVVRAKDLKGGHDEPEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLPYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGNLICDDLSFWHNYGMIEFRRGHIGQEWRVLSVECTVSIDACFCSERTFQCLSDLEALRRSSVAGKLPIIPILLSWTYLRVPYFYR 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8576049 8586519 + CmaCh18G010300.1 Cma18g01030 314368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01030 1183 SUPERFAMILY Protein kinase-like (PK-like) 769 1106 IPR011009 -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 1 110 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 41 71 - -
Cma18g01030 1183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 908 920 IPR008271 GO:0004672|GO:0006468
Cma18g01030 1183 MobiDBLite consensus disorder prediction 83 110 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 25 40 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 641 682 - -
Cma18g01030 1183 Pfam Protein kinase domain 787 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01030 1183 MobiDBLite consensus disorder prediction 695 709 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 226 619 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 303 565 - -
Cma18g01030 1183 ProSiteProfiles Protein kinase domain profile. 782 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01030 1183 Gene3D Transferase(Phosphotransferase) domain 1 841 1097 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 261 275 - -
Cma18g01030 1183 PANTHER DUAL SPECIFICITY PROTEIN KINASE 444 1097 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 641 668 - -
Cma18g01030 1183 Gene3D Phosphorylase Kinase; domain 1 753 840 - -
Cma18g01030 1183 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 444 1097 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 695 725 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 597 616 - -
Cma18g01030 1183 MobiDBLite consensus disorder prediction 1 24 - -
Cma18g01030 1183 CDD STKc_PRP4 781 1096 IPR044092 GO:0004674|GO:0006468|GO:0045292
Cma18g01030 1183 SMART serkin_6 782 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01030 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - csv:101220260 1497.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01400 Cma18g01030 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01030 Cma-Chr18:8576049 Cma15g01400 Cma-Chr15:8826657 4.52E-40 dispersed
Cma18g01030 Cma-Chr18:8576049 Cma04g01533 Cma-Chr4:7763614 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69310 PF00069 Pkinase 1.60E-46 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01030 Cma_Chr18 FPKM 14.413516 16.659006 14.267531 15.138535 14.612016 16.381651 15.727195 24.340414 23.694361 25.240137