Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01033 ATGGCAGGAAAATATGGATCAATCCGGCAGAGTTTTCTGGATCAGAACAGGGAAAAAGCCTTTTCTCGTAAGGGATATTCCGATTTCGGCCTGAACAGCTACGACGGCGCCGGCGACAACGTGAAATGTCGATGTTTCCGTACACTTACCGATTCAATCACCAACTTCTTGAAAGGCTTACGAGATACTACCGTCAAGTTGTACGAAATGGGTCGCTCCGATCCCCGCAAGATCTTCTTCGCTGCCAAGATGGGGCTGTCGCTTGCGTTCGTTTCGCTCGTCATTTTCTTTCGCGAGGCTTTGAAAGAAGTTGGCCAATATACAATCTGGGCTATTCTCACTGTTGTCGTCGTTTTCGAGTTCAGCGTTGGGGCAACGCTTAGTAAAGGGTTTAATCGTGCATTGGGGACATTTTCAGCCGGTGGACTTGCTATTGGTATTGCTGAACTATCCGTCTTAGCTGGACCATTTAAGGAAGTTATAATCGTAATCAGTATATTCCTTGCAGGGTTTTTTGCAAGCTATTGTAAATTGTATCCGCCGATGAAGTCGTATGAATACGGGTTCAGGTTGGACTTTGCCTGTTGGGAGCCACCGCATGGCCCTTACAAGACATTCAATTATCCATGGTACAATTATGTCAGAGTGAGTGGTGCTCTTAGGCATTGCGCTTTCATGGTCATGGCAATGCACGGATGTATTCTTTCAGAAATCCAGGCTCCACCGGAGAAAAGAAAGGTTTTTGCGAAGGAGCTTCAGAGGGTTGGCACTGAGGGAGCTAAGTTCTTACGTGAGCTTGGGAGCAAAGTAGAAAAGATGGAGAAGTTAAGCTCAGTCGACATGCTATTGGACGTTCATGATGCTGCAGAAGCTTTACAAATGAAGATTGATGAGAAATCTGATATACTGGTGAATTCAGCTAATTGGAGACCTGGAAAACAGCACAAGGAACATGAAGATCTTCAACATCTTATTGATACCAAAGATGATCATGGCAGACAGTTGGTAATCGAATCCCTGAACGATACGTTGGATGCTCAACACTCGAGCATCGGCTTCAACCCTTCCATTACAGAATGGGTATCCACAGAAAGTGTCTTCAACAAACACCTGGTTTCATGGCCACGCCTTTCATTTTTGAACGACACCGTGCCGAATGAAAGAGAGTCAAAAGTATATGAAAGTGCAAGCTCCTTATCTTTGGCAACGTTTACTTCGCTTCTCATCGAGTTTGTTGCAAGGCTGCAAAATCTCTTGAATGCATTTGAAGAACTCAGTGAGAAGGCAAATTTCAAGTCACCAGCGGAGATTAAAATTGAAAAGGAGAAAGTTGGATGTGATGTTAAAGAGGTGGATTGTGCAGTACGTTTACGATGCGCAGCAGCAGCGGCAGCACTCCGTGTTCTTAATATACTCCTGCATGCTCAAGCTTGTCAGTCAGATTTGATTTCGATCGCCGTCCGAGCAGCGTTTTGTTTAATCTGGATTTCACTACTTTACTTCGTCGTTGACAGGAAGGGAATAAGATCATATGGAGCATTGATTTTATCCACTTGTATTCTGCACGTCCGGAAGGCGCGAGTTTATCGTAAGCGGTTTTACAGGAAATCACTGTACAAGATGTCTATGGTCCACGAGCCTCTATATCCAATAGCTGTTCTTATTGACGAGCTGAAAAATGATGACATTCAGCTACGGTTGAACTCAATTCATAGACTTTCTACGATTGCACGTGCTCTTGGAGAGGAGCGAACGCGTAAAGAATTGATCCCTTTTCTGAGTGAAAACAATGATGATGATGATGAGGTGCTTCTTGCTATGGCTGAGGAGTTGGGAGTGTTCATCCCATATGTTGGTGGTGTTGAGCATGCCCATGTTTTGCTTCCACCTCTGGAAACTCTGTGCACTGTTGAGGAAACCTGTGTGAGGGACAAAGCTGTGGAGTCTTTGTGCAGAATTGGTTCCCAAATGAGAGAGAGTGATTTAGTTGATTGGTTTATTCCTCTCGTTAAGAGATTGGCAGCTGGTGAATGGTTTACGGCTAGAGTATCCGCATGTGGGCTATTTCATATTGCCTACCCTAGTGCTCCAGAGATGTTGAAGACCGAATTGCGGTCAATGTATGGCCAATTGTGTCAAGATGATATGCCCATGGTTAGGAGGTCTGCTGCCACAAATCTAGGAAAGTTTGCTGCAACAATTGAACCTGCTCATCTGAAGACTGATACCATGACAATTTTTGAGGATCTTACTCAAGATGATCAGGACTCTGTGAGATTGCTAGCCGTTGAGGGTTGTGCAGCTTTGGGCAAGTTATTGGAACCCCAGGATTGTGTATCGCATATTCTTCCAGTTATGGTTAACTTCTCCCAGGATAAGTCTTGGCGTGTCCGTTACATGGTTGCCAACCAGTTATACGAGTTGTGTGAAGCTGTAGGACCTGAACCTACTAGGACGGACTTGGTACCTGCTTATGTGCGCTTGCTTCGAGACAATGAAGCTGAAGTTCGTATAGCAGCTGCTGGCAAAGTGACCAAGTTTTGCCGGATTTTAAGTCCAGAACTAGCAATTCAGCATATTCTTCCCTGCGTTAAGGAATTGTCATCAGATTCCTCTCAGCATGTCCGTTCAGCTTTAGCCTCAGTTATCATGGGAATGGCTCCTGTGTTGGGAAAGGTTATCCACCCTTCCACCCGGGGGATCGATGGTTTAACCAGTCTCCCAGTCTTGTTTAATGATGCTACCATCGAACAACTGCTTCCGATATTCCTTTCTCTGCTTAAGGATGAATTCCCTGATGTGCGCCTCAATATCATTAGCAAGCTTGATCAAGTAAATCAGGTTATTGGAATTGATCTCTTGTCTCAATCACTGTTACCTGCCATTGTTGAACTTGCTGAGGATAGACACTGGAGAGTTAGGTTAGCAATTATAGAATACATTCCTTTATTGGCAAGTCAGCTGGGTGTAGGGTTTTTTGACGATAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGATTCTAGTTTTATGGACCAGAATCCCGAAATTTTACAGGGGAGGATATCCATACCCAAGCCGGAGGGCAATGGAAAAATGTCTAGTTTATATCTGGGGTCAGAAAGCCAACTTTGGTTGCTTCTTTGACGGCGATCTTGTTTACTCAATCCGTGATGCAGCAGCTAACAATTTGAAGCGTCTTGCAGAAGAATTTGGTCCTGAGTGGGCAATGCAGCATATTGTCCCACAGGTTCTTGACATGATTAACAACCCACATTATTTGTATAGAATGACTGTTCTTCGTGCGGTCTCCCTTCTTGCCCCAGTTATGGGCTCAGAAATCACATGCACAAAGCTTTTACCGGTGGTTATTAGTTCTTCCAAGGACAGGGTTCCAAATATCAAGTTTAATGTGGCGAAAGTGTTGCAGTCTCTCATTCCCATAGTTGACCAACCTATAACACTTGCGATGCAGGTGGTGGAAAAAACTATCCGCCCTAGCCTAGTTGAACTCAGTGAAGATCCAGATGTAGATGTCCGGTTCTTTGCTAACCAAGCTCTTCAATCAATCGATCACAACCTGAAACGCATGGCCAACTCCTTCATGAACCACATAATTGATCAGCTTACCCTCTCTATGTAA 3648 44.52 MAGKYGSIRQSFLDQNREKAFSRKGYSDFGLNSYDGAGDNVKCRCFRTLTDSITNFLKGLRDTTVKLYEMGRSDPRKIFFAAKMGLSLAFVSLVIFFREALKEVGQYTIWAILTVVVVFEFSVGATLSKGFNRALGTFSAGGLAIGIAELSVLAGPFKEVIIVISIFLAGFFASYCKLYPPMKSYEYGFRLDFACWEPPHGPYKTFNYPWYNYVRVSGALRHCAFMVMAMHGCILSEIQAPPEKRKVFAKELQRVGTEGAKFLRELGSKVEKMEKLSSVDMLLDVHDAAEALQMKIDEKSDILVNSANWRPGKQHKEHEDLQHLIDTKDDHGRQLVIESLNDTLDAQHSSIGFNPSITEWVSTESVFNKHLVSWPRLSFLNDTVPNERESKVYESASSLSLATFTSLLIEFVARLQNLLNAFEELSEKANFKSPAEIKIEKEKVGCDVKEVDCAVRLRCAAAAAALRVLNILLHAQACQSDLISIAVRAAFCLIWISLLYFVVDRKGIRSYGALILSTCILHVRKARVYRKRFYRKSLYKMSMVHEPLYPIAVLIDELKNDDIQLRLNSIHRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSMYGQLCQDDMPMVRRSAATNLGKFAATIEPAHLKTDTMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVSHILPVMVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKVIHPSTRGIDGLTSLPVLFNDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKILVLWTRIPKFYRGGYPYPSRRAMEKCLVYIWGQKANFGCFFDGDLVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLDMINNPHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVAKVLQSLIPIVDQPITLAMQVVEKTIRPSLVELSEDPDVDVRFFANQALQSIDHNLKRMANSFMNHIIDQLTLSM 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8595281 8611740 + CmaCh18G010330.1 Cma18g01033 314371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01033 1215 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 541 894 - -
Cma18g01033 1215 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 1052 1194 - -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 1082 1120 IPR021133 -
Cma18g01033 1215 Gene3D - 544 1194 IPR011989 -
Cma18g01033 1215 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 907 1010 - -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 1121 1159 IPR021133 -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 550 588 IPR021133 -
Cma18g01033 1215 Pfam Aluminium activated malate transporter 69 190 IPR020966 GO:0015743
Cma18g01033 1215 Pfam Aluminium activated malate transporter 192 426 IPR020966 GO:0015743
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 919 957 IPR021133 -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 958 996 IPR021133 -
Cma18g01033 1215 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 65 KDA REGULATORY SUBUNIT A BETA ISOFORM 541 894 - -
Cma18g01033 1215 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 65 KDA REGULATORY SUBUNIT A BETA ISOFORM 907 1010 - -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 743 781 IPR021133 -
Cma18g01033 1215 SUPERFAMILY ARM repeat 549 1192 IPR016024 -
Cma18g01033 1215 Pfam HEAT repeat 782 810 IPR000357 GO:0005515
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 1166 1198 IPR021133 -
Cma18g01033 1215 Pfam HEAT repeats 921 1007 - -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 782 820 IPR021133 -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 860 892 IPR021133 -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 821 859 IPR021133 -
Cma18g01033 1215 ProSiteProfiles HEAT repeat profile. 704 742 IPR021133 -
Cma18g01033 1215 Coils Coil 408 428 - -
Cma18g01033 1215 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 65 KDA REGULATORY SUBUNIT A BETA ISOFORM 1052 1194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01033 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A - csv:101222376 1090.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01530 Cma-Chr4:7748313 Cma18g01033 Cma-Chr18:8595281 6.73E-96 dispersed
Cma18g01033 Cma-Chr18:8595281 Cma02g01415 Cma-Chr2:8167068 5.79E-29 dispersed
Cma10g00242 Cma-Chr10:1073605 Cma18g01033 Cma-Chr18:8595281 6.55E-59 wgd
Cma11g00266 Cma-Chr11:1351488 Cma18g01033 Cma-Chr18:8595281 3.45E-59 wgd
Cma18g01033 Cma-Chr18:8595281 Cma04g01529 Cma-Chr4:7739712 1.16E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g284 . . . . . Bpe10g00941 Bma14g01701 Bma15g00083 . Cmo18g01047 . Cma18g01033 . Car18g00957 Sed06g1871 Cpe09g00286 . Bhi07g01346 Tan04g0883 Cmetu10g0865 . Hepe01g1208 . . Cla05g02316 Cam05g2488 Cec05g2512 Cco05g2554 Clacu05g2483 Cmu05g2346 Cre05g2462 . . . . Lsi04g00273 Csa05g02596 . Cme10g00276 Blo06g01049 Blo11g00833 Bda07g01529 . Bpe11g01692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004168 0 2 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 1 2 2 1 1 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01033 Cma_Chr18 FPKM 41.890728 39.248161 35.366074 36.155125 31.093073 34.03735 33.792343 28.476492 26.57202 29.653383