Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01035 ATGGACGCCGACTCCGGCAGCGTCTCCTCTTCTTCATTTGATTCCGCCTCCGTTGCTACCGCCGATCAGCTCCAGAATGCAGCTCGGGGTCGAGGCCAAGCGTTGTCGAGTGAATCGCCACGTTCTTGGCGGGATATTTTCTGGTCCATTGTTTTTATAATTCACTTGATCATTGTGGGATTTGTGCTCGTGATTCTGGGGCTTAATAGGTTCAAGAAGAGCAATAGGTTACAAATCGATAAGTTCACCAATACAATTATGGAGAATCGGGTTGGATTGACAGAGGATTACTGGCCGCTTTTTGCTTTGGCAGGTGGAGTTGGAACCTTACTTGGCTGGACTTGGTTGTTCTTGCTTGGTTCTTTTGCAAATCATGTAATGAAAATTTCTGTGCATATTTTGACTACTTATCTTGCTGTGATAAGTGTATTGTGCTTCTGGGGCCAGCTTTTTTTCTGGGGTGTAGCGTTTGCAATCGGTGCAGGGCTGCAGTTCCTGTATGTTATATCAGTTATAGACAGACTACCATTTACATTGCTAGTGTTGCAAAAGGCTGTAAAGATGGTATCCGGGCTACCTGAAGTTATTAGAGTTGCTTATACTTTCATGATTGTCATGCTTTTGTGTATGGGAGTTTGGTCTTTCGGAGTCGCTGGTATCGTGGCTTCGAGTATGGGAGACGGTGGACGTTGGTGGCTAATTGTGGTTTTCTCCATAAGCTTATTCTGGGTTGGTGCTGTTTTTTGTAATACTCTACATGTTATAGTTTCTGGAATGGTGTTTCTAGTTCTATTCCATGGTGGTGGAGAATCATCATCTTTGCCATCGAAGTCATTGGCTTGGGCCTCACGGTATGCGGTGACGACATCTTTTGGTAGCATTTGCTATGGATCTCTTTTTACAGCAGCCATTCGGACACTGCGGTGGGAGATCAGGGGAATTCGATCGAAGATCGGCAAGAACGAGTGTCTACTTTGTTGTGTTGATTTTTTGTTTCATCTCGTCGAGACTCTTGTTCGTTTCTTTAACAAATATGCATATGTCCAGATAGCAGTTTATGGTAAAAGCTTCAACCGTTCAGCTAGGGATGCGTGGGAGCTGTTCCAGTCAACTGGAGTTGAAGCTCTTGTTGCTTATGATTGCTCAGGTGCTGTTCTGCTGATGAGCACCGTCATGGGCGGTCTCATTGCTGGGACTTGCTCGGGCATTTGGACATGGTTTAAGTGGAAGGATAAGGTGTCGATGGTGGCGTGTACCGCAACATTGATGGGAATGGTTATGTGCCGTTACATCCATATACATCTGTTATGCAGAAGATCCATTGCTGATTCACAGATGGGATATCGAATTTTTCGACCAGATGTCGGAGATGCTTCACCAGCGCCTTCAGCATCGGAGTGCACGAGCAAGGGAAGTGTTAACGCAGTATCGCGTATGGATGATCAGCAGAAACTTGCCAATTTCTCTTCTTTACCATTGGCACCACCCCTACCGCCTCCGTCCCCGCCACCACCACCCTCTTTTTCTGCCAATTTCAGCCACCCCTACATGGCGGCGCCGGTCGATTACCCCCGAAATCCCTGCCAACCCCAGCCTCACTCCACAGTTGCTTGGTCCAGCGGTCTCTGCGACTGCTGCAACGACATTAGCTGTTTGACTTGCTGGTGTCCCTGCATTACGTTCGGCCACATAGCAGAGATAGTAGACAGAGGATCAATATCGTGTGGCGTTAGCGGCGCAATTTACTTGTCGATACTATGCCTAACGGGATGCTCGTGCTTGTACTCTTGCCTTTACCGCTCGAAAATGAGGGGACAGTTCTCGTTGGAGGAGAGCCCTTGCTGTGATTGCTGTGTCCATTGCTTGTGTGAGCAATGTGCGCTATGCCAACAGTATAGGGAGCTTCAACACCAAGGCTTCGACATGGTGGCATGGGAATGTGGAGAGGCAGAGAAGGATTGCTGCTCGTGCTGCTGCGATGCCGCCGCCGCCGCCCAGTGTGCAAGGAATGATTCGTTAACGCCATGCGGTGATGCTCTTTCTTTCTTGTTCTTCTGCCTTTTTAATATTTATATAGATTGA 2082 47.74 MDADSGSVSSSSFDSASVATADQLQNAARGRGQALSSESPRSWRDIFWSIVFIIHLIIVGFVLVILGLNRFKKSNRLQIDKFTNTIMENRVGLTEDYWPLFALAGGVGTLLGWTWLFLLGSFANHVMKISVHILTTYLAVISVLCFWGQLFFWGVAFAIGAGLQFLYVISVIDRLPFTLLVLQKAVKMVSGLPEVIRVAYTFMIVMLLCMGVWSFGVAGIVASSMGDGGRWWLIVVFSISLFWVGAVFCNTLHVIVSGMVFLVLFHGGGESSSLPSKSLAWASRYAVTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNRSARDAWELFQSTGVEALVAYDCSGAVLLMSTVMGGLIAGTCSGIWTWFKWKDKVSMVACTATLMGMVMCRYIHIHLLCRRSIADSQMGYRIFRPDVGDASPAPSASECTSKGSVNAVSRMDDQQKLANFSSLPLAPPLPPPSPPPPPSFSANFSHPYMAAPVDYPRNPCQPQPHSTVAWSSGLCDCCNDISCLTCWCPCITFGHIAEIVDRGSISCGVSGAIYLSILCLTGCSCLYSCLYRSKMRGQFSLEESPCCDCCVHCLCEQCALCQQYRELQHQGFDMVAWECGEAEKDCCSCCCDAAAAAQCARNDSLTPCGDALSFLFFCLFNIYID 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8615616 8622022 - CmaCh18G010350.1 Cma18g01035 314373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01035 693 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 537 637 IPR006461 -
Cma18g01035 693 Pfam Plasma-membrane choline transporter 156 426 IPR007603 GO:0022857|GO:0055085
Cma18g01035 693 Pfam PLAC8 family 538 634 IPR006461 -
Cma18g01035 693 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 19 428 - -
Cma18g01035 693 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 19 428 IPR007603 GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01035 - - - cmax:111467716 822.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00067 Cma-Chr4:320782 Cma18g01035 Cma-Chr18:8615616 1.22E-23 dispersed
Cma04g00068 Cma-Chr4:328323 Cma18g01035 Cma-Chr18:8615616 1.58E-27 dispersed
Cma14g00983 Cma-Chr14:5162821 Cma18g01035 Cma-Chr18:8615616 3.97E-23 dispersed
Cma18g01035 Cma-Chr18:8615616 Cma14g00468 Cma-Chr14:2277520 6.22E-11 dispersed
Cma18g01035 Cma-Chr18:8615616 Cma04g01526 Cma-Chr4:7729438 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g280 . . . . . Bpe10g00942 . . . Cmo18g01050 . Cma18g01035 . Car18g00959 Sed06g1869 Cpe09g00284 . Bhi07g01354 Tan04g0888 Cmetu10g1132 Lac13g0473 . . . Cla05g02318 Cam05g2491 . Cco05g2557 Clacu05g2485 . Cre05g2464 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01035 Cma_Chr18 FPKM 6.317563 4.626051 11.851033 12.961649 2.080127 2.69309 2.680243 1.780659 1.99566 2.371658