Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01036 ATGTCCATGGCGAAGATTTGGTTATTCCTTCTTATTGCTGTTTTCGCCTCTGCTTCCGGCGGTCTCTCCCGGAGTTTGCCTCACAGGACTAAGACCTCGGTGCTCGATGTGGCGGCTTCGATTCAGAGGACTACGGAGATTTTTGCATTTGAGGTTAAGTCTCCGGTTGAAGAAGAGAAGTCCGTATCGGATTCGTCTTCTTTGGCTCTGCAGTTGAACTCGAGGATTTCGATTGTGAAAACCTCGCATAGTGACTACAAATCGCTTACATTATCCAGACTGAGCCGCGACTCCGCTCGTGTTAGATCTTTGACTGCTAGGATAGATCTAGTCATTCGAGGTACTACTGGAGCGGATCTTCGAACTTTCGGGAATGGCGGTGGTTCGCGATTTAGGGCTGAGGATTTCGAGAGTCCGATTGTGTCAGGCGCCAGTCAGGGGAGTGGTGAGTATTTTTCTCGAGTTGGAATTGGTAGGCCGCCGAGTCCGGTTTATATGGTGCTTGATACTGGCAGTGATGTAAGTTGGGTTCAATGTGCGCCTTGTGCCGATTGTTACGAGCAAACTGATCCGATTTTTGAGCCGACTTCGTCTACTTCTTTTTCATCTCTGTCCTGCGAAACAGAGCAATGTAGATCACTCGATGTTTCGGAGTGCCGGAATGGTACTTGTCTTTACGAGGTCTCTTATGGCGACGGCTCTTCCACTGATGGCGATTTTGTTACTGAAACTGTCACTCTTGGCTCGACTTCTCTCAGTAATATTGCCCTAGGTTGCGGCCATAACAATGAAGGTTTGTTCGTCGGCGCCGCTGGCTTGCTCGGACTCGGCGGCGGCTCGCTTTCGTTTCCTTCTCAACTTAATGCCTCGTCGTTCTCATACTGTCTCGTGGACCGTGACTCAGATTCGGCCTCGACTCTCGATTTCAACTCACCGATTCCTCCCGATGCGGTAATCGCGCCGCTACACCGGAACCCTAATTTGGACACGTTCTTCTACCTCGGCGTGACGGGACTGAGCGTCGGAGGTGAGATTCTTCCGATTCCCGAGACATCGTTCCAAATGAGCCAAGACGGGAACGGCGGGATTATCATCGACTCCGGCACCGCCGTGACGCGATTGCAGACCACCGTTTACAACTTGCTGCGCGACGCCTTCGTGAAGAGCACGCCCTATTTGCAGTCCGCACGTGGCGTGGCATTGTTCGATACTTGTTACGACTTGTCGTCGAAGTCGAGAGTCGAAGTGCCGACGGTGTCGTTTCACTTCACCAACGGGAAGGAACTGCCGTTGCCGGCCAAGAATTACCTGATACCGGTTGATTCTGAAGGAACGTTTTGTTTCGCCTTCGCGCCTACGGATTCGGCGTTGTCAATCCTCGGGAACGCACAGCAGCAAGGGACACGTGTCAGTTTTGACCTTACTAATTCGTTTGTCGGGTTCTCGCCCAACAAATGCTGA 1461 51.81 MSMAKIWLFLLIAVFASASGGLSRSLPHRTKTSVLDVAASIQRTTEIFAFEVKSPVEEEKSVSDSSSLALQLNSRISIVKTSHSDYKSLTLSRLSRDSARVRSLTARIDLVIRGTTGADLRTFGNGGGSRFRAEDFESPIVSGASQGSGEYFSRVGIGRPPSPVYMVLDTGSDVSWVQCAPCADCYEQTDPIFEPTSSTSFSSLSCETEQCRSLDVSECRNGTCLYEVSYGDGSSTDGDFVTETVTLGSTSLSNIALGCGHNNEGLFVGAAGLLGLGGGSLSFPSQLNASSFSYCLVDRDSDSASTLDFNSPIPPDAVIAPLHRNPNLDTFFYLGVTGLSVGGEILPIPETSFQMSQDGNGGIIIDSGTAVTRLQTTVYNLLRDAFVKSTPYLQSARGVALFDTCYDLSSKSRVEVPTVSFHFTNGKELPLPAKNYLIPVDSEGTFCFAFAPTDSALSILGNAQQQGTRVSFDLTNSFVGFSPNKC 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8623057 8624517 - CmaCh18G010360.1 Cma18g01036 314374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01036 486 Gene3D Acid Proteases 313 486 IPR021109 -
Cma18g01036 486 Pfam Xylanase inhibitor N-terminal 151 307 IPR032861 -
Cma18g01036 486 PANTHER ASPARTYL PROTEASES 12 486 IPR001461 GO:0004190|GO:0006508
Cma18g01036 486 Gene3D Acid Proteases 128 309 IPR021109 -
Cma18g01036 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 166 177 IPR001969 GO:0004190|GO:0006508
Cma18g01036 486 SUPERFAMILY Acid proteases 145 486 IPR021109 -
Cma18g01036 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 12 486 - -
Cma18g01036 486 ProSiteProfiles Peptidase family A1 domain profile. 151 482 IPR033121 -
Cma18g01036 486 Pfam Xylanase inhibitor C-terminal 332 482 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01036 K22683 APF2; aspartyl protease family protein [EC:3.4.23.-] - csv:101222856 780.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00035 Cma-Chr18:135761 Cma18g01036 Cma-Chr18:8623057 0 dispersed
Cma18g00815 Cma-Chr18:7120002 Cma18g01036 Cma-Chr18:8623057 2.79E-124 dispersed
Cma01g01315 Cma-Chr1:9386065 Cma18g01036 Cma-Chr18:8623057 3.90E-78 transposed
Cma11g00264 Cma-Chr11:1348663 Cma18g01036 Cma-Chr18:8623057 2.89E-148 wgd
Cma13g01035 Cma-Chr13:7908238 Cma18g01036 Cma-Chr18:8623057 0 wgd
Cma18g01036 Cma-Chr18:8623057 Cma04g01525 Cma-Chr4:7726201 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01036 Cma_Chr18 FPKM 4.364134 5.284025 1.199006 1.190783 10.959829 12.822052 10.748365 0.293258 0.454671 0.566821