Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01041 ATGTTTGATTCAAAATCATTCATGGATTTCCCCGATAATGTTGTTGATATTCGTGTGGGAATGGATTTGCGGCACTATGCCGATGCTCTGGATCAAGAACGCAGAAAAATTCTGGTGTTTCAGAGAGAACTTCCCCTCTGTGTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGGTCTCGTCGGAGAGTTCAGAGCATACTTCTTCCGATGGCCCTGTTTTGGAGGAGTTCATTCCGATCAAAACAGCCTCCGGTGATTCCAATTTTGAACAATCAAAACCAGATATAAATGAAGTGGGTCCATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAAACGTCGGATCCTCCAGTTGTTGAGGATGTTGCTGAGAAACCGCCTTCGGCGGTTGTTGACGTAGAAAAGAAAGGCGTGGGCGGTGGTTTTCAGCCATTTCAGAAGGAGAAAAATCCACCCAAAACAGAGGCGGCGGCGGTTGTCGGCAAAACGGTCTGTTGTTCTCCGGTGTTGGAGGCGACATCGAGTTCGACGGCGGAAACTGTCTCCAAAGACAGCGGCGGAAACAGTCAACGAGAAGAGAAGGAATCTCAAACTCAAAGAAAACGGAGGCGGCGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCGTGCCCTTCAACGACTGGGCGGCCCTCAAGTTGCTACACCAAAACAAATTCGTGAGTTAATGAAGGTTGACGATTTGACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTACACGCACGACGGCCGACAAATTCTGCCATGCACGACAGCGCTGTGCAGAAATTCGTGGTGGTCGGAAGCATGTGGGAACCTCCGCCGCCGCCACCACCGAAGTACATGGCGATGACGACGGGGCAAGTGACCCCGGTGGCGAGAGTCGTGCAACGGCAGAAGACGGCGGAGGGAGGAAAGGGGAGACCCATCGGCGGCGAAAGCGTAGAATTATTTTAA 1005 50.75 MFDSKSFMDFPDNVVDIRVGMDLRHYADALDQERRKILVFQRELPLCVELVTRAIDSCRQQLSGVSSESSEHTSSDGPVLEEFIPIKTASGDSNFEQSKPDINEVGPLDWLKSAQLWNQTSDPPVVEDVAEKPPSAVVDVEKKGVGGGFQPFQKEKNPPKTEAAAVVGKTVCCSPVLEATSSSTAETVSKDSGGNSQREEKESQTQRKRRRRWSSELHRRFVRALQRLGGPQVATPKQIRELMKVDDLTNDEVKSHLQKYRLHARRPTNSAMHDSAVQKFVVVGSMWEPPPPPPPKYMAMTTGQVTPVARVVQRQKTAEGGKGRPIGGESVELF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8663506 8665131 - CmaCh18G010410.1 Cma18g01041 314379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01041 334 PANTHER TRANSCRIPTION FACTOR HHO2 22 306 - -
Cma18g01041 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 22 306 IPR044787 GO:0003700|GO:0006355
Cma18g01041 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cma18g01041 334 MobiDBLite consensus disorder prediction 193 210 - -
Cma18g01041 334 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Cma18g01041 334 MobiDBLite consensus disorder prediction 180 215 - -
Cma18g01041 334 Gene3D - 207 264 - -
Cma18g01041 334 SUPERFAMILY Homeodomain-like 205 266 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01041 - - - cpep:111802196 528.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00910 Cma-Chr15:4714619 Cma18g01041 Cma-Chr18:8663506 2.42E-79 dispersed
Cma18g01041 Cma-Chr18:8663506 Cma12g01229 Cma-Chr12:9608620 7.75E-49 dispersed
Cma18g01041 Cma-Chr18:8663506 Cma04g02062 Cma-Chr4:13755560 3.66E-83 wgd
Cma18g01041 Cma-Chr18:8663506 Cma04g01522 Cma-Chr4:7701261 2.12E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020093 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36812 None None None None Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01041 Cma_Chr18 FPKM 2.231303 2.228027 2.274719 1.434424 0.0 0.0 0.603143 2.962805 2.728455 2.98954