Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01042 ATGGACCAACCCACCACTTCCATTAAATCTCCGCCGCTGGACACCAGTCTCGGCGGCGCTACCAGTATCGTTTTGGACTCTGCTGACTCCAGCACCGCCGTCGGGTGCGGCGTCGAGGCTGAATCCCGGAAGCTACCCTCCTCCCGTTTCAAAGGAGTGGTACCACAGCCCAATGGACGATGGGGCGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGAACATTCAATGAAGAAGACGAAGCCGCACGTGCCTACGACGTGGCTGCCCAACGCTTCCGTGGTCGTGACGCCGTTACCAATTTCAAACCGTTATCTCACGGTCAAGTAGACGACGTCGTATCCGCCTTTCTTAACTCCCATTCCAAAGCTGAAATCGTCGACATGCTACGTAAACATACCTACCTAGACGAACTACACCAAAGCAAACGAAACGCCGATTTATTATCTTCGGATCGTAAAAGAAACGGTTCGTTATCCGGTTCGGATAACGAATCGGATTCCGCTCGTGAACTTTTATTTGAAAAAGCCGTTACGCCTAGTGATGTCGGGAAATTGAACCGTTTAGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCGCCGGTTCCGCCAAAGGACTACTCTTAAACTTCGAAGACGGCGTCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTAACCGCCGGTGACGTCGTCAGCTTCTTGAAATCCACCGGTGAAGATAAGCAGCTATACATCGAATGGAAGGCGAGTAAGAGTACACCCTCGACCGGGTCCAACACGAACCCGGTTCAGACGGTGAGATTATTTGGAGTGGACATTATGAAAGTAACGCCGAGTAGTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTTTGAGTTCAGAATGTAACAAAAAACAAAGGATCGTCGGAGCATTGTAA 1011 50.45 MDQPTTSIKSPPLDTSLGGATSIVLDSADSSTAVGCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGQVDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNADLLSSDRKRNGSLSGSDNESDSARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSAGSAKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTGEDKQLYIEWKASKSTPSTGSNTNPVQTVRLFGVDIMKVTPSSGCSEKRRREMEFLSSECNKKQRIVGAL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8666735 8667745 - CmaCh18G010420.1 Cma18g01042 314380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01042 336 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 4 336 - -
Cma18g01042 336 Pfam AP2 domain 49 96 IPR001471 GO:0003700|GO:0006355
Cma18g01042 336 MobiDBLite consensus disorder prediction 1 20 - -
Cma18g01042 336 SUPERFAMILY DNA-binding pseudobarrel domain 173 266 IPR015300 -
Cma18g01042 336 CDD AP2 48 103 IPR001471 GO:0003700|GO:0006355
Cma18g01042 336 Gene3D - 162 289 IPR015300 -
Cma18g01042 336 CDD B3_DNA 174 262 IPR003340 GO:0003677
Cma18g01042 336 ProSiteProfiles B3 DNA-binding domain profile. 175 280 IPR003340 GO:0003677
Cma18g01042 336 SMART B3_2 175 280 IPR003340 GO:0003677
Cma18g01042 336 Pfam B3 DNA binding domain 175 276 IPR003340 GO:0003677
Cma18g01042 336 ProSiteProfiles AP2/ERF domain profile. 49 104 IPR001471 GO:0003700|GO:0006355
Cma18g01042 336 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 336 IPR044800 GO:0003700
Cma18g01042 336 SMART rav1_2 49 110 IPR001471 GO:0003700|GO:0006355
Cma18g01042 336 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
Cma18g01042 336 Gene3D AP2/ERF domain 48 105 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02012 Cma18g01042 CCT
Cma15g00991 Cma18g01042 CCT
Cma15g00991 Cma18g01042 ECH
Cma04g02012 Cma18g01042 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00655 Cma-Chr10:2966036 Cma18g01042 Cma-Chr18:8666735 2.26E-06 dispersed
Cma11g00827 Cma-Chr11:4146868 Cma18g01042 Cma-Chr18:8666735 3.23E-55 dispersed
Cma15g00991 Cma-Chr15:5901090 Cma18g01042 Cma-Chr18:8666735 5.23E-121 dispersed
Cma17g00554 Cma-Chr17:4493889 Cma18g01042 Cma-Chr18:8666735 3.43E-46 dispersed
Cma18g01042 Cma-Chr18:8666735 Cma04g01521 Cma-Chr4:7697947 1.47E-177 wgd
Cma18g01042 Cma-Chr18:8666735 Cma04g02012 Cma-Chr4:12585554 8.67E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36813 PF02362 B3 5.90E-27 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01042 K09287 - csv:101203784 550.821