Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g01042 | ATGGACCAACCCACCACTTCCATTAAATCTCCGCCGCTGGACACCAGTCTCGGCGGCGCTACCAGTATCGTTTTGGACTCTGCTGACTCCAGCACCGCCGTCGGGTGCGGCGTCGAGGCTGAATCCCGGAAGCTACCCTCCTCCCGTTTCAAAGGAGTGGTACCACAGCCCAATGGACGATGGGGCGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGAACATTCAATGAAGAAGACGAAGCCGCACGTGCCTACGACGTGGCTGCCCAACGCTTCCGTGGTCGTGACGCCGTTACCAATTTCAAACCGTTATCTCACGGTCAAGTAGACGACGTCGTATCCGCCTTTCTTAACTCCCATTCCAAAGCTGAAATCGTCGACATGCTACGTAAACATACCTACCTAGACGAACTACACCAAAGCAAACGAAACGCCGATTTATTATCTTCGGATCGTAAAAGAAACGGTTCGTTATCCGGTTCGGATAACGAATCGGATTCCGCTCGTGAACTTTTATTTGAAAAAGCCGTTACGCCTAGTGATGTCGGGAAATTGAACCGTTTAGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCGCCGGTTCCGCCAAAGGACTACTCTTAAACTTCGAAGACGGCGTCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTAACCGCCGGTGACGTCGTCAGCTTCTTGAAATCCACCGGTGAAGATAAGCAGCTATACATCGAATGGAAGGCGAGTAAGAGTACACCCTCGACCGGGTCCAACACGAACCCGGTTCAGACGGTGAGATTATTTGGAGTGGACATTATGAAAGTAACGCCGAGTAGTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTTTGAGTTCAGAATGTAACAAAAAACAAAGGATCGTCGGAGCATTGTAA | 1011 | 50.45 | MDQPTTSIKSPPLDTSLGGATSIVLDSADSSTAVGCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGQVDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNADLLSSDRKRNGSLSGSDNESDSARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSAGSAKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTGEDKQLYIEWKASKSTPSTGSNTNPVQTVRLFGVDIMKVTPSSGCSEKRRREMEFLSSECNKKQRIVGAL | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8666735 | 8667745 | - | CmaCh18G010420.1 | Cma18g01042 | 314380 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g01042 | 336 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 4 | 336 | - | - | |
Cma18g01042 | 336 | Pfam | AP2 domain | 49 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Cma18g01042 | 336 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma18g01042 | 336 | SUPERFAMILY | DNA-binding pseudobarrel domain | 173 | 266 | IPR015300 | - | |
Cma18g01042 | 336 | CDD | AP2 | 48 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Cma18g01042 | 336 | Gene3D | - | 162 | 289 | IPR015300 | - | |
Cma18g01042 | 336 | CDD | B3_DNA | 174 | 262 | IPR003340 | GO:0003677 | |
Cma18g01042 | 336 | ProSiteProfiles | B3 DNA-binding domain profile. | 175 | 280 | IPR003340 | GO:0003677 | |
Cma18g01042 | 336 | SMART | B3_2 | 175 | 280 | IPR003340 | GO:0003677 | |
Cma18g01042 | 336 | Pfam | B3 DNA binding domain | 175 | 276 | IPR003340 | GO:0003677 | |
Cma18g01042 | 336 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cma18g01042 | 336 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 4 | 336 | IPR044800 | GO:0003700 | |
Cma18g01042 | 336 | SMART | rav1_2 | 49 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Cma18g01042 | 336 | SUPERFAMILY | DNA-binding domain | 48 | 104 | IPR016177 | GO:0003677 | |
Cma18g01042 | 336 | Gene3D | AP2/ERF domain | 48 | 105 | IPR036955 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02012 | Cma18g01042 | CCT | |
Cma15g00991 | Cma18g01042 | CCT | |
Cma15g00991 | Cma18g01042 | ECH | |
Cma04g02012 | Cma18g01042 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00655 | Cma-Chr10:2966036 | Cma18g01042 | Cma-Chr18:8666735 | 2.26E-06 | dispersed | |
Cma11g00827 | Cma-Chr11:4146868 | Cma18g01042 | Cma-Chr18:8666735 | 3.23E-55 | dispersed | |
Cma15g00991 | Cma-Chr15:5901090 | Cma18g01042 | Cma-Chr18:8666735 | 5.23E-121 | dispersed | |
Cma17g00554 | Cma-Chr17:4493889 | Cma18g01042 | Cma-Chr18:8666735 | 3.43E-46 | dispersed | |
Cma18g01042 | Cma-Chr18:8666735 | Cma04g01521 | Cma-Chr4:7697947 | 1.47E-177 | wgd | |
Cma18g01042 | Cma-Chr18:8666735 | Cma04g02012 | Cma-Chr4:12585554 | 8.67E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36813 | PF02362 | B3 | 5.90E-27 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g01042 | K09287 | - | csv:101203784 | 550.821 |