Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g01047 | ATGCGTGGGGAGGATCAAGAACAGGATCATCATCAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACTACAAAACAACAACACCGATCATATTATCTATGGAGATCATCACCATCATGGAGCTGGAAGAGGGTTGATTTTCCCGGGCGACGTCGTGTCGCCGGTTCTAAACTCGTGGCCTCCGCTCAACCCATTTCTCATTCCTCCTCCGCCTCCGCCTCCACCACCAACATCGTTATGTTCGTCGTCGTCGTATGGTAATCTTTTTAACCGGAGACCGGCTAATTGTCTTCAATTTGCTTATGATGGAACTTCCTCAGCGGACCACTTGGGTCGAATCATATCAACCACGCTTGGACCAGTGGTTCATCATGGCTCAACTGCTCCCTTTGGACTTCAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCGGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTACTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTTCAATCCCAACAGACATCGACGAGCTAACAGTGGACGATGCCTCAGACGAGATGATGATCAACGGCGCCAAATTTGTAATAAAAGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACACTGAAATCCTTGCGCTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGGCGCGTGAGAAATGTGCTGTTTGTCACTGGTGAAGACGACGAGCCATCAACTGACCATAATAATAACAACAATAATAATAATAATAATAATCCCAATTCAGACAGCCAACAACAACAACATAGTATCAGCTCAATTCAAGAAGCATTGAAGGCTGTGATGGAAAAAACAGGACCGGATGATTCTTCGTCAGGAAACATTAAACGACAAAGAACAAATAACATCAATATCCTTTAA | 1092 | 43.77 | MRGEDQEQDHHQHQGECSQTIENMFQEQLLLHQLQNNNTDHIIYGDHHHHGAGRGLIFPGDVVSPVLNSWPPLNPFLIPPPPPPPPPTSLCSSSSYGNLFNRRPANCLQFAYDGTSSADHLGRIISTTLGPVVHHGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSSIPTDIDELTVDDASDEMMINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDEPSTDHNNNNNNNNNNNPNSDSQQQQHSISSIQEALKAVMEKTGPDDSSSGNIKRQRTNNINIL | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8715387 | 8718101 | - | CmaCh18G010470.1 | Cma18g01047 | 314385 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g01047 | 363 | MobiDBLite | consensus disorder prediction | 305 | 332 | - | - | |
Cma18g01047 | 363 | MobiDBLite | consensus disorder prediction | 344 | 363 | - | - | |
Cma18g01047 | 363 | SMART | finulus | 168 | 217 | IPR011598 | GO:0046983 | |
Cma18g01047 | 363 | Pfam | Helix-loop-helix DNA-binding domain | 165 | 211 | IPR011598 | GO:0046983 | |
Cma18g01047 | 363 | Gene3D | - | 157 | 218 | IPR036638 | GO:0046983 | |
Cma18g01047 | 363 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 166 | 218 | IPR036638 | GO:0046983 | |
Cma18g01047 | 363 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 162 | 211 | IPR011598 | GO:0046983 | |
Cma18g01047 | 363 | MobiDBLite | consensus disorder prediction | 297 | 363 | - | - | |
Cma18g01047 | 363 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 64 | 363 | IPR045847 | GO:0003700|GO:0006355 | |
Cma18g01047 | 363 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 64 | 363 | - | - | |
Cma18g01047 | 363 | CDD | bHLH_AtAIG1_like | 157 | 234 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02004 | Cma18g01047 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00876 | Cma-Chr6:5372952 | Cma18g01047 | Cma-Chr18:8715387 | 9.73E-40 | dispersed | |
Cma18g01047 | Cma-Chr18:8715387 | Cma04g01537 | Cma-Chr4:7789674 | 4.72E-159 | wgd | |
Cma18g01047 | Cma-Chr18:8715387 | Cma04g02004 | Cma-Chr4:12357179 | 6.13E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36815 | PF00010 | HLH | 1.80E-12 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g01047 | - | - | csv:101214615 | 431.409 |