Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01047 ATGCGTGGGGAGGATCAAGAACAGGATCATCATCAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACTACAAAACAACAACACCGATCATATTATCTATGGAGATCATCACCATCATGGAGCTGGAAGAGGGTTGATTTTCCCGGGCGACGTCGTGTCGCCGGTTCTAAACTCGTGGCCTCCGCTCAACCCATTTCTCATTCCTCCTCCGCCTCCGCCTCCACCACCAACATCGTTATGTTCGTCGTCGTCGTATGGTAATCTTTTTAACCGGAGACCGGCTAATTGTCTTCAATTTGCTTATGATGGAACTTCCTCAGCGGACCACTTGGGTCGAATCATATCAACCACGCTTGGACCAGTGGTTCATCATGGCTCAACTGCTCCCTTTGGACTTCAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCGGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTACTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTTCAATCCCAACAGACATCGACGAGCTAACAGTGGACGATGCCTCAGACGAGATGATGATCAACGGCGCCAAATTTGTAATAAAAGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACACTGAAATCCTTGCGCTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGGCGCGTGAGAAATGTGCTGTTTGTCACTGGTGAAGACGACGAGCCATCAACTGACCATAATAATAACAACAATAATAATAATAATAATAATCCCAATTCAGACAGCCAACAACAACAACATAGTATCAGCTCAATTCAAGAAGCATTGAAGGCTGTGATGGAAAAAACAGGACCGGATGATTCTTCGTCAGGAAACATTAAACGACAAAGAACAAATAACATCAATATCCTTTAA 1092 43.77 MRGEDQEQDHHQHQGECSQTIENMFQEQLLLHQLQNNNTDHIIYGDHHHHGAGRGLIFPGDVVSPVLNSWPPLNPFLIPPPPPPPPPTSLCSSSSYGNLFNRRPANCLQFAYDGTSSADHLGRIISTTLGPVVHHGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSSIPTDIDELTVDDASDEMMINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDEPSTDHNNNNNNNNNNNPNSDSQQQQHSISSIQEALKAVMEKTGPDDSSSGNIKRQRTNNINIL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8715387 8718101 - CmaCh18G010470.1 Cma18g01047 314385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01047 363 MobiDBLite consensus disorder prediction 305 332 - -
Cma18g01047 363 MobiDBLite consensus disorder prediction 344 363 - -
Cma18g01047 363 SMART finulus 168 217 IPR011598 GO:0046983
Cma18g01047 363 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Cma18g01047 363 Gene3D - 157 218 IPR036638 GO:0046983
Cma18g01047 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 218 IPR036638 GO:0046983
Cma18g01047 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Cma18g01047 363 MobiDBLite consensus disorder prediction 297 363 - -
Cma18g01047 363 PANTHER TRANSCRIPTION FACTOR BHLH30 64 363 IPR045847 GO:0003700|GO:0006355
Cma18g01047 363 PANTHER TRANSCRIPTION FACTOR BHLH30 64 363 - -
Cma18g01047 363 CDD bHLH_AtAIG1_like 157 234 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02004 Cma18g01047 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00876 Cma-Chr6:5372952 Cma18g01047 Cma-Chr18:8715387 9.73E-40 dispersed
Cma18g01047 Cma-Chr18:8715387 Cma04g01537 Cma-Chr4:7789674 4.72E-159 wgd
Cma18g01047 Cma-Chr18:8715387 Cma04g02004 Cma-Chr4:12357179 6.13E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36815 PF00010 HLH 1.80E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01047 - - csv:101214615 431.409