Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01048 ATGCTTGCTTCTAACACCAATCAAATCCATGATGAACATGAAAGCCACCAACTTTCCTTACAATTCATAGATTACTACAACTTCGATCCTTTCCTCGATGAAGATTTCATTTTGAGTCAAATTTTGTATACTCAAAAACAGCAATTTCTTGATGCTAATAATTTTGAACCTGAAATTGGGTTTGAAATTAGTGTCAATAACACCAATGAGGAGATAACCCAGAAAGCTTTACCTCAAAAGAAGCCCATTTCTAGAAAGAGAAGCTCGAACAAGGATAGACATAGCAAGATCTGCACGTCAAAAGGGCCAAGAGATAGAAGAATGAGGCTTTCAATTGAAATTGCAAGAAGCTTCTTTGATCTTCAAGATATGCTTGGGTTTGATAAAGCAAGCAAGACAGTGGAGTGGCTTTTTGCTAAATCAAGAAGTGCAATTAAGGAGCTAAAGGAGAAATATTTGTCAGAGAGTCATAATTACAACAAAAGTTTTGATTTTTCTCCTCTTTTTAGGAAAGTTTCTGTTTTTGAAGCGCCTAGAGAGAAGAAGAGAAGGAAATTAAGGGTGGTTGATAAAGAATCAAGATCCAAGGCAAGAGCTAGGGCGAGGGAAAGAACAAGGGCAAAGATTGTTCATCGTTTGGAGATATCAAAATGTGATTTTGAAGGAAACCCAATTGGGGATTGTATGATGGGTGATGTTAGTGAAGAAATTGGCACCAAAAACAAGATTTTTGAATTCAAACAAAGCGAAAACGAGAGATTTTTGAGCTCGAATGTCGAAAACTCAGCTGATCATGTTCATCTTCTTCCTGGTTCCTCCATGGATATGAGCTCCATGTCCTTGGACAGCATCAAAGCATCACCTGCAGGCTTGAAATTGCTGGAACTTGATGAAATTGATGGTGGGCTGATCTTCTATGGAGAATGA 927 37.86 MLASNTNQIHDEHESHQLSLQFIDYYNFDPFLDEDFILSQILYTQKQQFLDANNFEPEIGFEISVNNTNEEITQKALPQKKPISRKRSSNKDRHSKICTSKGPRDRRMRLSIEIARSFFDLQDMLGFDKASKTVEWLFAKSRSAIKELKEKYLSESHNYNKSFDFSPLFRKVSVFEAPREKKRRKLRVVDKESRSKARARARERTRAKIVHRLEISKCDFEGNPIGDCMMGDVSEEIGTKNKIFEFKQSENERFLSSNVENSADHVHLLPGSSMDMSSMSLDSIKASPAGLKLLELDEIDGGLIFYGE 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8726164 8727637 + CmaCh18G010480.1 Cma18g01048 314386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01048 308 MobiDBLite consensus disorder prediction 72 104 - -
Cma18g01048 308 Pfam TCP family transcription factor 89 155 IPR017887 -
Cma18g01048 308 ProSiteProfiles TCP domain profile. 90 148 IPR017887 -
Cma18g01048 308 ProSiteProfiles R domain profile. 191 208 IPR017888 -
Cma18g01048 308 PANTHER TRANSCRIPTION FACTOR TCP12 45 267 - -
Cma18g01048 308 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 267 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01048 - - - cmos:111458752 289.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01416 Cma18g01048 CCT
Cma15g01416 Cma18g01048 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01416 Cma-Chr15:8941690 Cma18g01048 Cma-Chr18:8726164 1.43E-32 dispersed
Cma18g01048 Cma-Chr18:8726164 Cma16g00416 Cma-Chr16:2078869 1.13E-19 dispersed
Cma10g00251 Cma-Chr10:1125345 Cma18g01048 Cma-Chr18:8726164 2.36E-26 wgd
Cma13g01039 Cma-Chr13:7930012 Cma18g01048 Cma-Chr18:8726164 4.04E-20 wgd
Cma15g00189 Cma-Chr15:914951 Cma18g01048 Cma-Chr18:8726164 1.05E-23 wgd
Cma18g01048 Cma-Chr18:8726164 Cma04g01538 Cma-Chr4:7799620 6.91E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g254 . Blo16g01048 . Bda11g01129 Bpe13g01326 . . . . Cmo18g01066 . Cma18g01048 Car04g01587 Car18g00973 Sed11g1580 Cpe09g00271 Cpe01g01756 Bhi07g01375 Tan04g0902 Cmetu10g0068 Lac13g0454 Hepe01g1225 . . Cla05g02333 Cam05g2507 Cec05g2530 Cco05g2573 Clacu05g2501 Cmu05g2363 Cre05g2479 Cone13ag0859 . . . Lsi04g00294 Csa05g02078 Chy10g01112 Cme10g00295 . . . Bda11g01129 . . . . . . . . Cma15g01416 . Car15g01279 Cpe13g00032 . . . . . . . . Cla01g00558 Cam01g0582 Cec01g0574 Cco01g0597 Clacu01g0576 Cmu01g0547 Cre09g1960 Lsi09g00602 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002245 2 1 1 2 1 2 4 2 2 2 2 2 3 2 2 3 2 1 4 2 2 2 2 2 3 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36816 PF03634 TCP 1.70E-35 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01048 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 0.764867 0.36043 1.36378 0.0 0.0 0.0