Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g01050 | ATGGCTTCCGAGAGCGATTCCAGATCCAGTTCGGCGGCCGATTCGTATGTTGGAAGCTTGATAAGCTTGACTTCCAAGAGCGAGATTAGATACGAAGGCGTTCTTTACAACATCAACACGGAAGAGTCTAGTATCGGACTTAGAAATGTACGGTCATTTGGAACGGAAGGGAGAAAGAAGGATGGGCCACAAGTCCCACCAAGTGACCAAGTTTTTGAATACATCTTGTTTCGTGGAAGTGATATCAAGGATCTACAGGTAAAATCTTCCCCGCCTGTTCAGACTACATCCTTGATAAACCATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGTATCGATTCCTTCAAGCCTGCCTCCTCCTGTTAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCAATGGGAATTCCTGGATCTAATTTCCAGAGTGGGTTGCCTTTATATCAGCCTGTAGGAAATGTGGGGTCTTGGGGAGCTTCTCCTTCGCAACCTCCTCCAAATCCAAGTGCTGGTGGACTTGGTTTGCCAATGTACTGGCAAGGGTATTATGGCCACCCTAATGGACTTCCTCACATGCATCAGCAATCGTTACTTCGTCCACCACCTGGCCTGTCGTTGCCTTCTTCCTTGCAGCAGCCACTGCAATATCCTAATCTTAATGCTTATTTACCCACTGGGGCACCAAATCCATTAGAAGTTTCATCTTCTTTATTCTCTGCTAATCCTACCGCTCCTAGTTTATCATCCACAGCAATGCCACCAGTAACTGTATCTTCGACACATCCATCTGTGCTGACTGTTCCACAGACGTCTGAGATGTCATCAAGCTCAATGGTCAACAAGACAATAAATTCTGCTCTTCCTCAAGCTCCCATAAGTACCAATTTGACATCGCTATCTCCTTTGACTGCAAGTTTAGATGTCAGTCCTGTTGTGCCTCCAACTACTAACAAAACTACCACAGTTTCTGGTCCAGCTTTGTCTTATCAAACTGTCTCTCAATCTACATCCTCTATTATTGGAACATCGAATTCTGTTCTCACAAGTGCGCCTGCACCTGCCCTTGTGACTCCAGACCAGCTGTTACATACTACTGTAGTCTCTTCATCTCTGCCTTCGCAAACAGTTCAGAAGGATGTGGAAGTGATTCAAGCATCTTCCTCACTAGCAGCCGAACAAACTGTTCCAGTTCCAGCAGATACTCAGCCACCGTTATTACCGTTACCGACGTCTTCACGAGTTGTTCAGAAGAACCAACATCCAACAGAGCAATTCACAGAAGATTTTGACTTCATGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCCAAAATACAACGACGGGGATGAAAAATTCAGTGATGAAGACGACACCTATGAAGAAGATGACGGTGAATCATCAAAGTTGGGGATCAAGTCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCAAGCAACACTACTAACAATGAAGCTCAGAACGGTAGGAGGACGAGATACTTTGAACAAATCAAGTTGGACACTGAGACATTTGGTGAGTTTGCAAGATACCGAGGTGGTCGTGGTGGTTTTGGTTCCGGACGCGGTGGTCGTCGTGGTGGTTATTATGGGAGGGGATATGGCCATGGTGGAAGGGGTCGAGGGCGAGTCCCAGATGAAAAATCGGCTCTATGCACAGTTCCCCAGATAAGTTTCCAGCCTACCAACCTCTGCACTCGCAGCCGCGTCAAGATCGTTGAGCTGCAGGCTGCCTTCTCCATCTCCATGGCCGCAGCATTGCCCTCACTGACCCCATTACTCATTTTTGCCAGAATTTTGGGACTGCTTGTTGCCGTTCTGATCTTCGTTTGGGCTCTTGCCTTCAGTTCTAGCTTCGGCCATCTTCCCCCGGCCCCAGATGACCGTATCTTCGATGTTCTGCATCCTTTGTTCATGGTAATTGGTTTCATTCTACTCAGCGGAGAAGCGATTTTGGTTCATAGTTGGCTGCCTGGTTCGAGGAATTTGAGGAAATCTGTTCATCTGATTCTTCAAGGGCTGGCTTTGACTTTTGGGATTTTTGGAATTTGGACTAAGTTTCATTGGGATCGTGGCTTTCTGGCTAACTTCCACAGCTTACATTCTTGGTTGGGTTTGAGCGTTTTCACTTTGTTTGGAGCTCAGTGGATGATGGGTTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGAGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGCTATACAGTTACGCATTGGCAGTGACAGTAGCAGAAACAGGGCTTCTAGAGAAGCTGACATTGTTGCAAACAAAGAGAAACGTCCCTAGAAAAGGCCCTGAAGCCATGGTTGTCAACAGTCTAGGCCTGGCCTTGGCTTTGCTCGGTGGAATTGTGTCTCAAACTTTTCACGCATTCAAGACAGATTTTAATGAACCGTCTAAGCCATTTAAACAAGTTGTTTCGAAGATGATAGCGGCTGGCAGAAGAAAACAAGAAGCCCGAGAGACATGCCAAAAAGGGTACCATGTGGGTTGCATGCCCATTCGTCTTTTGAGTTTGCCTTACTTTGTTGCCTTCTCGACAGCACGGTTCCATATGCTTCGGTCCATCGAGCAAGCGGCTAAGAATCAAGTCACAGCCTTGCCCTTGCTCGTGCTAGGCCTTGTGGTAGCTGCTTCAGTTGCAGCCTATGCTGTAAGACATATCAATGTTAAAAACTCAAAATCCGTCGCCTCTGTCGACAAGCTCACCGAAAATGGTGAAGAGAAGGAGGAGATTAAACATTATGTGGAGGAAGAGGAGGAAGAAGAAGTCAAGTTAATAAGTAGTGTGTTTGATCAAGTTCCTGTTTATATAACTGAAGATGAAGACATTTTACCTGAATTTGAAGAACTTTTATCTGGGGAGATTGAGTTTCCATTACCTGAAATCGACGACGACAAAGCCGAGAAGGATAGAGTGTATGAAACCGAGATGGCAAACAACGCGAGCGAATTGGAACAGTTGCGTAACTTAGTACAGGAATTGGAGGAGAGGGAAGTGAAGCTTGAAGGTGAACTGCTCGAATACTACGGATTAAAAGAGCAGGAATCCGACATTACGGAGTTGCAGAGGCAGCTCAAGATCAAGGCAGTAGAGATTGATATGCTTAATATTACCATTAGCTCTTTGCAGGCTGAAAGGAAGAAGCTTCAAGAGGAGATTGCACAAGATGGTATGGTTAAGAAGGAGTTGGCGTTTGCTAGGAATAAGATCAAGGAGCTGCAAAGGCAGATTCAGCTTGATGCTAACCAAACAAAAGGGCAGCTGTTGTTGCTTAAGCAACAAGTTTCTGGTCTACAGGCAAAGGAGATGGAAACTAGAAGGAAAGATGATGAAATGGAAAAGAAACTGAAAGCTGTGAAGGATTTGGAGGTTGAAGTTATGGAGCTTAAGCGGATGAATAAAGAACTTCAAATTGAAAAGCGGGAGCTGACTATTAAACTCGATGCTGCCGAGAATAGCATCTCGACTCTCTCGAACATGACAGAAAGTGAATTGGTATCCCAAACTAGAGAGGAAGTCAACAGTTTAAGGCATGCAAATGAGGACTTAATAAAGCAAGTTGAAGGACTTCAAATGAATAGGTTCAGTGAAGTTGAGGAATTAGTTTACCTTAGATGGGTCAATGCCTGCCTAAGATATGAACTCCGCAACTACCAGGCGCCTACCGGAAAACTATCCGCTCGTGATCTCAACAAGAATTTGAGCCCAAAATCACAGGAGAAGGCTAAACAACTCATGTTGGAGTATGCTGGATCGGAACGTGGACAAGGAGACACCGATCTCGAAAGCAACTTCTCCCAACCATCTTCTCCTGGAAGTGAAGATTTTGACAATGCTTCAATTGATAGTTCCTTTAGTAGATATAGTAGCCTCAGTAAGAAACCAAGCTTGATCCAGAAGTTGAAGAAATGGGGCGGTCGGAGCAAAGATGATTCGAGCGCTCTTTCGTCACCAGCCAGATCATTTTCGGGGAGTTCTCCGAGCAGGATGAGCATGAGTCAGAAGCCAAGAGGTCCATTAGAAGCATTGATGCTTAGAAATGCAAGTGACAATGTTGCAATCACCACGTTTGGTATGATGGAACACGAAATTCCCGACTCTCCAAGCACCCCGAATCTGCCAACTATCAGAACTCAAACTCCTAATGAATCCTTGAATTCAGTAGCATCATCATTTCAGCTGATGTCTAAATCAGTTGAAGGAGTATTAGATGAGAAATATCCAGCATACAAAGACCGACATAAACTGGCATTAGCAAGAGAGAAGCAAATTAAGGAAAGGGCTGATCAAGCAAGAGCAGAGAGGTTTGGCAATATTTCAAATTCAAATTTGAACACTGAATTTAAAGGTAAGACAGATAAAGATAGATATGCAACTTTGCCGCCAAAACTTTCTCAAATAAAGGAAAAACCAGTTGTACCTAGTGCTTCTGCTGATCCATCTGGTGAAGATAAGACGACGGAGTCTCCAGCCATAAGCAGGATGAAGCTAGCTGAGATCGAGAAGCGACCTCCACGAACGCCTAAGCCACCACCAAAACCATCAGCAGGTGCTTCTGTAAGTAAAGGTCCCAATCCTCAAGGTGGTGTACCAGCTGCTCCACCTCTACCACCACCACCTCCACCACCTGGTGGACCGCCTCGTCCACCGCCTCCTCCGGGAAGCTTGGCTAAAGGTGTAGGTGGTGATAAGGTTCATAGAGCGCCTGAGTTAGTTGAATTCTATCAGACGTTAATGAAACGAGAGGCAAAGAAGGATACTCCTCTACTTTCTTCTACAACATCAAATGTATCTGATGCTAGAAGTAACATGATTGGGGAGATTGAGAACAGATCATCATTCCTCATAGCAGTTAAAGCTGATGTGGAAACTCAAGGCGATTTTGTCATGTCATTGGCGGCTGAAGTTCGAGGAGCTACCTTCTCTAATATAGAGGATGTCGTGGCCTTCGTAAATTGGCTAGACGAAGAGCTATCGTTCTTGGTTGATGAAAGGGCTGTCCTGAAGCACTTTGATTGGCCAGAAGGAAAAGCAGATGCATTAAGAGAGGCGTCTTTCGAGTATCAGGACCTAATGAAGTTGGAGAAGCGGGTCACCACGTTCGTCGATGAACCGAAACTTCCATGTGAAGCAGCTTTAAAGAAAATGTACTCCTTGCTTGAGAAGGTTGAGCAGAGTGTCTATGCACTCCTACGCACAAGAGACATGGCTATCTCGCGATATCGAGAGTTTGGAATTCCAGTTGATTGGTTGTCAGATACAGGTGTTGTTGGAAAGGTATGA | 5388 | 45.19 | MASESDSRSSSAADSYVGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDQVFEYILFRGSDIKDLQVKSSPPVQTTSLINHDPAIIQSHYPRPVSIPSSLPPPVSGPLPDINSQAMPMGIPGSNFQSGLPLYQPVGNVGSWGASPSQPPPNPSAGGLGLPMYWQGYYGHPNGLPHMHQQSLLRPPPGLSLPSSLQQPLQYPNLNAYLPTGAPNPLEVSSSLFSANPTAPSLSSTAMPPVTVSSTHPSVLTVPQTSEMSSSSMVNKTINSALPQAPISTNLTSLSPLTASLDVSPVVPPTTNKTTTVSGPALSYQTVSQSTSSIIGTSNSVLTSAPAPALVTPDQLLHTTVVSSSLPSQTVQKDVEVIQASSSLAAEQTVPVPADTQPPLLPLPTSSRVVQKNQHPTEQFTEDFDFMAMNEKFNKDEVWGHLGKNTKSPKYNDGDEKFSDEDDTYEEDDGESSKLGIKSVYNKDDFFDTLSSNTTNNEAQNGRRTRYFEQIKLDTETFGEFARYRGGRGGFGSGRGGRRGGYYGRGYGHGGRGRGRVPDEKSALCTVPQISFQPTNLCTRSRVKIVELQAAFSISMAAALPSLTPLLIFARILGLLVAVLIFVWALAFSSSFGHLPPAPDDRIFDVLHPLFMVIGFILLSGEAILVHSWLPGSRNLRKSVHLILQGLALTFGIFGIWTKFHWDRGFLANFHSLHSWLGLSVFTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVTVAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLALALLGGIVSQTFHAFKTDFNEPSKPFKQVVSKMIAAGRRKQEARETCQKGYHVGCMPIRLLSLPYFVAFSTARFHMLRSIEQAAKNQVTALPLLVLGLVVAASVAAYAVRHINVKNSKSVASVDKLTENGEEKEEIKHYVEEEEEEEVKLISSVFDQVPVYITEDEDILPEFEELLSGEIEFPLPEIDDDKAEKDRVYETEMANNASELEQLRNLVQELEEREVKLEGELLEYYGLKEQESDITELQRQLKIKAVEIDMLNITISSLQAERKKLQEEIAQDGMVKKELAFARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEMETRRKDDEMEKKLKAVKDLEVEVMELKRMNKELQIEKRELTIKLDAAENSISTLSNMTESELVSQTREEVNSLRHANEDLIKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPTGKLSARDLNKNLSPKSQEKAKQLMLEYAGSERGQGDTDLESNFSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSALSSPARSFSGSSPSRMSMSQKPRGPLEALMLRNASDNVAITTFGMMEHEIPDSPSTPNLPTIRTQTPNESLNSVASSFQLMSKSVEGVLDEKYPAYKDRHKLALAREKQIKERADQARAERFGNISNSNLNTEFKGKTDKDRYATLPPKLSQIKEKPVVPSASADPSGEDKTTESPAISRMKLAEIEKRPPRTPKPPPKPSAGASVSKGPNPQGGVPAAPPLPPPPPPPGGPPRPPPPPGSLAKGVGGDKVHRAPELVEFYQTLMKREAKKDTPLLSSTTSNVSDARSNMIGEIENRSSFLIAVKADVETQGDFVMSLAAEVRGATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASFEYQDLMKLEKRVTTFVDEPKLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLSDTGVVGKV | 1795 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8736623 | 8750498 | - | CmaCh18G010500.1 | Cma18g01050 | 314388 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g01050 | 1795 | SUPERFAMILY | Sm-like ribonucleoproteins | 15 | 92 | IPR010920 | - | |
Cma18g01050 | 1795 | CDD | LSm14_N | 16 | 87 | IPR025609 | - | |
Cma18g01050 | 1795 | Pfam | Scd6-like Sm domain | 16 | 89 | IPR025609 | - | |
Cma18g01050 | 1795 | Pfam | Eukaryotic cytochrome b561 | 656 | 786 | IPR006593 | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 1563 | 1591 | - | - | |
Cma18g01050 | 1795 | PANTHER | PROTEIN CHUP1, CHLOROPLASTIC | 906 | 1795 | IPR040265 | - | |
Cma18g01050 | 1795 | ProSiteProfiles | DFDF domain profile. | 421 | 457 | IPR025762 | - | |
Cma18g01050 | 1795 | Gene3D | - | 7 | 92 | - | - | |
Cma18g01050 | 1795 | ProSiteProfiles | FFD box profile. | 488 | 503 | IPR025761 | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 1337 | 1372 | - | - | |
Cma18g01050 | 1795 | Gene3D | - | 606 | 827 | - | - | |
Cma18g01050 | 1795 | SMART | FDF_2 | 427 | 531 | IPR019050 | - | |
Cma18g01050 | 1795 | SMART | 561_7 | 656 | 781 | IPR006593 | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 1288 | 1314 | - | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 451 | 466 | - | - | |
Cma18g01050 | 1795 | CDD | Cyt_b561_ACYB-1_like | 650 | 789 | - | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 1466 | 1597 | - | - | |
Cma18g01050 | 1795 | Coils | Coil | 1098 | 1118 | - | - | |
Cma18g01050 | 1795 | PANTHER | PROTEIN CHUP1, CHLOROPLASTIC | 906 | 1795 | - | - | |
Cma18g01050 | 1795 | Coils | Coil | 1147 | 1195 | - | - | |
Cma18g01050 | 1795 | Pfam | FDF domain | 427 | 529 | IPR019050 | - | |
Cma18g01050 | 1795 | Coils | Coil | 1201 | 1228 | - | - | |
Cma18g01050 | 1795 | Coils | Coil | 1012 | 1042 | - | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 451 | 481 | - | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 1345 | 1368 | - | - | |
Cma18g01050 | 1795 | ProSiteProfiles | Cytochrome b561 domain profile. | 618 | 823 | IPR006593 | - | |
Cma18g01050 | 1795 | Coils | Coil | 1046 | 1087 | - | - | |
Cma18g01050 | 1795 | MobiDBLite | consensus disorder prediction | 1292 | 1314 | - | - | |
Cma18g01050 | 1795 | SMART | LSM14_2 | 10 | 110 | IPR025609 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma15g01418 | Cma18g01050 | CCT | |
Cma15g01418 | Cma18g01050 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01543 | Cma-Chr4:7822563 | Cma18g01050 | Cma-Chr18:8736623 | 0 | dispersed | |
Cma04g01995 | Cma-Chr4:11985199 | Cma18g01050 | Cma-Chr18:8736623 | 1.28E-170 | dispersed | |
Cma15g01418 | Cma-Chr15:8956482 | Cma18g01050 | Cma-Chr18:8736623 | 2.95E-85 | dispersed | |
Cma15g01419 | Cma-Chr15:8960673 | Cma18g01050 | Cma-Chr18:8736623 | 2.60E-173 | dispersed | |
Cma19g00416 | Cma-Chr19:5015093 | Cma18g01050 | Cma-Chr18:8736623 | 5.89E-40 | dispersed | |
Cma01g01357 | Cma-Chr1:9668432 | Cma18g01050 | Cma-Chr18:8736623 | 1.38E-13 | transposed | |
Cma08g00748 | Cma-Chr8:4497509 | Cma18g01050 | Cma-Chr18:8736623 | 7.40E-60 | transposed | |
Cma15g00193 | Cma-Chr15:931475 | Cma18g01050 | Cma-Chr18:8736623 | 5.16E-55 | wgd | |
Cma18g01050 | Cma-Chr18:8736623 | Cma04g01541 | Cma-Chr4:7809860 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g01050 | - | - | csv:101205484 | 1380.16 |