Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01050 ATGGCTTCCGAGAGCGATTCCAGATCCAGTTCGGCGGCCGATTCGTATGTTGGAAGCTTGATAAGCTTGACTTCCAAGAGCGAGATTAGATACGAAGGCGTTCTTTACAACATCAACACGGAAGAGTCTAGTATCGGACTTAGAAATGTACGGTCATTTGGAACGGAAGGGAGAAAGAAGGATGGGCCACAAGTCCCACCAAGTGACCAAGTTTTTGAATACATCTTGTTTCGTGGAAGTGATATCAAGGATCTACAGGTAAAATCTTCCCCGCCTGTTCAGACTACATCCTTGATAAACCATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGTATCGATTCCTTCAAGCCTGCCTCCTCCTGTTAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCAATGGGAATTCCTGGATCTAATTTCCAGAGTGGGTTGCCTTTATATCAGCCTGTAGGAAATGTGGGGTCTTGGGGAGCTTCTCCTTCGCAACCTCCTCCAAATCCAAGTGCTGGTGGACTTGGTTTGCCAATGTACTGGCAAGGGTATTATGGCCACCCTAATGGACTTCCTCACATGCATCAGCAATCGTTACTTCGTCCACCACCTGGCCTGTCGTTGCCTTCTTCCTTGCAGCAGCCACTGCAATATCCTAATCTTAATGCTTATTTACCCACTGGGGCACCAAATCCATTAGAAGTTTCATCTTCTTTATTCTCTGCTAATCCTACCGCTCCTAGTTTATCATCCACAGCAATGCCACCAGTAACTGTATCTTCGACACATCCATCTGTGCTGACTGTTCCACAGACGTCTGAGATGTCATCAAGCTCAATGGTCAACAAGACAATAAATTCTGCTCTTCCTCAAGCTCCCATAAGTACCAATTTGACATCGCTATCTCCTTTGACTGCAAGTTTAGATGTCAGTCCTGTTGTGCCTCCAACTACTAACAAAACTACCACAGTTTCTGGTCCAGCTTTGTCTTATCAAACTGTCTCTCAATCTACATCCTCTATTATTGGAACATCGAATTCTGTTCTCACAAGTGCGCCTGCACCTGCCCTTGTGACTCCAGACCAGCTGTTACATACTACTGTAGTCTCTTCATCTCTGCCTTCGCAAACAGTTCAGAAGGATGTGGAAGTGATTCAAGCATCTTCCTCACTAGCAGCCGAACAAACTGTTCCAGTTCCAGCAGATACTCAGCCACCGTTATTACCGTTACCGACGTCTTCACGAGTTGTTCAGAAGAACCAACATCCAACAGAGCAATTCACAGAAGATTTTGACTTCATGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCCAAAATACAACGACGGGGATGAAAAATTCAGTGATGAAGACGACACCTATGAAGAAGATGACGGTGAATCATCAAAGTTGGGGATCAAGTCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCAAGCAACACTACTAACAATGAAGCTCAGAACGGTAGGAGGACGAGATACTTTGAACAAATCAAGTTGGACACTGAGACATTTGGTGAGTTTGCAAGATACCGAGGTGGTCGTGGTGGTTTTGGTTCCGGACGCGGTGGTCGTCGTGGTGGTTATTATGGGAGGGGATATGGCCATGGTGGAAGGGGTCGAGGGCGAGTCCCAGATGAAAAATCGGCTCTATGCACAGTTCCCCAGATAAGTTTCCAGCCTACCAACCTCTGCACTCGCAGCCGCGTCAAGATCGTTGAGCTGCAGGCTGCCTTCTCCATCTCCATGGCCGCAGCATTGCCCTCACTGACCCCATTACTCATTTTTGCCAGAATTTTGGGACTGCTTGTTGCCGTTCTGATCTTCGTTTGGGCTCTTGCCTTCAGTTCTAGCTTCGGCCATCTTCCCCCGGCCCCAGATGACCGTATCTTCGATGTTCTGCATCCTTTGTTCATGGTAATTGGTTTCATTCTACTCAGCGGAGAAGCGATTTTGGTTCATAGTTGGCTGCCTGGTTCGAGGAATTTGAGGAAATCTGTTCATCTGATTCTTCAAGGGCTGGCTTTGACTTTTGGGATTTTTGGAATTTGGACTAAGTTTCATTGGGATCGTGGCTTTCTGGCTAACTTCCACAGCTTACATTCTTGGTTGGGTTTGAGCGTTTTCACTTTGTTTGGAGCTCAGTGGATGATGGGTTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGAGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGCTATACAGTTACGCATTGGCAGTGACAGTAGCAGAAACAGGGCTTCTAGAGAAGCTGACATTGTTGCAAACAAAGAGAAACGTCCCTAGAAAAGGCCCTGAAGCCATGGTTGTCAACAGTCTAGGCCTGGCCTTGGCTTTGCTCGGTGGAATTGTGTCTCAAACTTTTCACGCATTCAAGACAGATTTTAATGAACCGTCTAAGCCATTTAAACAAGTTGTTTCGAAGATGATAGCGGCTGGCAGAAGAAAACAAGAAGCCCGAGAGACATGCCAAAAAGGGTACCATGTGGGTTGCATGCCCATTCGTCTTTTGAGTTTGCCTTACTTTGTTGCCTTCTCGACAGCACGGTTCCATATGCTTCGGTCCATCGAGCAAGCGGCTAAGAATCAAGTCACAGCCTTGCCCTTGCTCGTGCTAGGCCTTGTGGTAGCTGCTTCAGTTGCAGCCTATGCTGTAAGACATATCAATGTTAAAAACTCAAAATCCGTCGCCTCTGTCGACAAGCTCACCGAAAATGGTGAAGAGAAGGAGGAGATTAAACATTATGTGGAGGAAGAGGAGGAAGAAGAAGTCAAGTTAATAAGTAGTGTGTTTGATCAAGTTCCTGTTTATATAACTGAAGATGAAGACATTTTACCTGAATTTGAAGAACTTTTATCTGGGGAGATTGAGTTTCCATTACCTGAAATCGACGACGACAAAGCCGAGAAGGATAGAGTGTATGAAACCGAGATGGCAAACAACGCGAGCGAATTGGAACAGTTGCGTAACTTAGTACAGGAATTGGAGGAGAGGGAAGTGAAGCTTGAAGGTGAACTGCTCGAATACTACGGATTAAAAGAGCAGGAATCCGACATTACGGAGTTGCAGAGGCAGCTCAAGATCAAGGCAGTAGAGATTGATATGCTTAATATTACCATTAGCTCTTTGCAGGCTGAAAGGAAGAAGCTTCAAGAGGAGATTGCACAAGATGGTATGGTTAAGAAGGAGTTGGCGTTTGCTAGGAATAAGATCAAGGAGCTGCAAAGGCAGATTCAGCTTGATGCTAACCAAACAAAAGGGCAGCTGTTGTTGCTTAAGCAACAAGTTTCTGGTCTACAGGCAAAGGAGATGGAAACTAGAAGGAAAGATGATGAAATGGAAAAGAAACTGAAAGCTGTGAAGGATTTGGAGGTTGAAGTTATGGAGCTTAAGCGGATGAATAAAGAACTTCAAATTGAAAAGCGGGAGCTGACTATTAAACTCGATGCTGCCGAGAATAGCATCTCGACTCTCTCGAACATGACAGAAAGTGAATTGGTATCCCAAACTAGAGAGGAAGTCAACAGTTTAAGGCATGCAAATGAGGACTTAATAAAGCAAGTTGAAGGACTTCAAATGAATAGGTTCAGTGAAGTTGAGGAATTAGTTTACCTTAGATGGGTCAATGCCTGCCTAAGATATGAACTCCGCAACTACCAGGCGCCTACCGGAAAACTATCCGCTCGTGATCTCAACAAGAATTTGAGCCCAAAATCACAGGAGAAGGCTAAACAACTCATGTTGGAGTATGCTGGATCGGAACGTGGACAAGGAGACACCGATCTCGAAAGCAACTTCTCCCAACCATCTTCTCCTGGAAGTGAAGATTTTGACAATGCTTCAATTGATAGTTCCTTTAGTAGATATAGTAGCCTCAGTAAGAAACCAAGCTTGATCCAGAAGTTGAAGAAATGGGGCGGTCGGAGCAAAGATGATTCGAGCGCTCTTTCGTCACCAGCCAGATCATTTTCGGGGAGTTCTCCGAGCAGGATGAGCATGAGTCAGAAGCCAAGAGGTCCATTAGAAGCATTGATGCTTAGAAATGCAAGTGACAATGTTGCAATCACCACGTTTGGTATGATGGAACACGAAATTCCCGACTCTCCAAGCACCCCGAATCTGCCAACTATCAGAACTCAAACTCCTAATGAATCCTTGAATTCAGTAGCATCATCATTTCAGCTGATGTCTAAATCAGTTGAAGGAGTATTAGATGAGAAATATCCAGCATACAAAGACCGACATAAACTGGCATTAGCAAGAGAGAAGCAAATTAAGGAAAGGGCTGATCAAGCAAGAGCAGAGAGGTTTGGCAATATTTCAAATTCAAATTTGAACACTGAATTTAAAGGTAAGACAGATAAAGATAGATATGCAACTTTGCCGCCAAAACTTTCTCAAATAAAGGAAAAACCAGTTGTACCTAGTGCTTCTGCTGATCCATCTGGTGAAGATAAGACGACGGAGTCTCCAGCCATAAGCAGGATGAAGCTAGCTGAGATCGAGAAGCGACCTCCACGAACGCCTAAGCCACCACCAAAACCATCAGCAGGTGCTTCTGTAAGTAAAGGTCCCAATCCTCAAGGTGGTGTACCAGCTGCTCCACCTCTACCACCACCACCTCCACCACCTGGTGGACCGCCTCGTCCACCGCCTCCTCCGGGAAGCTTGGCTAAAGGTGTAGGTGGTGATAAGGTTCATAGAGCGCCTGAGTTAGTTGAATTCTATCAGACGTTAATGAAACGAGAGGCAAAGAAGGATACTCCTCTACTTTCTTCTACAACATCAAATGTATCTGATGCTAGAAGTAACATGATTGGGGAGATTGAGAACAGATCATCATTCCTCATAGCAGTTAAAGCTGATGTGGAAACTCAAGGCGATTTTGTCATGTCATTGGCGGCTGAAGTTCGAGGAGCTACCTTCTCTAATATAGAGGATGTCGTGGCCTTCGTAAATTGGCTAGACGAAGAGCTATCGTTCTTGGTTGATGAAAGGGCTGTCCTGAAGCACTTTGATTGGCCAGAAGGAAAAGCAGATGCATTAAGAGAGGCGTCTTTCGAGTATCAGGACCTAATGAAGTTGGAGAAGCGGGTCACCACGTTCGTCGATGAACCGAAACTTCCATGTGAAGCAGCTTTAAAGAAAATGTACTCCTTGCTTGAGAAGGTTGAGCAGAGTGTCTATGCACTCCTACGCACAAGAGACATGGCTATCTCGCGATATCGAGAGTTTGGAATTCCAGTTGATTGGTTGTCAGATACAGGTGTTGTTGGAAAGGTATGA 5388 45.19 MASESDSRSSSAADSYVGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDQVFEYILFRGSDIKDLQVKSSPPVQTTSLINHDPAIIQSHYPRPVSIPSSLPPPVSGPLPDINSQAMPMGIPGSNFQSGLPLYQPVGNVGSWGASPSQPPPNPSAGGLGLPMYWQGYYGHPNGLPHMHQQSLLRPPPGLSLPSSLQQPLQYPNLNAYLPTGAPNPLEVSSSLFSANPTAPSLSSTAMPPVTVSSTHPSVLTVPQTSEMSSSSMVNKTINSALPQAPISTNLTSLSPLTASLDVSPVVPPTTNKTTTVSGPALSYQTVSQSTSSIIGTSNSVLTSAPAPALVTPDQLLHTTVVSSSLPSQTVQKDVEVIQASSSLAAEQTVPVPADTQPPLLPLPTSSRVVQKNQHPTEQFTEDFDFMAMNEKFNKDEVWGHLGKNTKSPKYNDGDEKFSDEDDTYEEDDGESSKLGIKSVYNKDDFFDTLSSNTTNNEAQNGRRTRYFEQIKLDTETFGEFARYRGGRGGFGSGRGGRRGGYYGRGYGHGGRGRGRVPDEKSALCTVPQISFQPTNLCTRSRVKIVELQAAFSISMAAALPSLTPLLIFARILGLLVAVLIFVWALAFSSSFGHLPPAPDDRIFDVLHPLFMVIGFILLSGEAILVHSWLPGSRNLRKSVHLILQGLALTFGIFGIWTKFHWDRGFLANFHSLHSWLGLSVFTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVTVAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLALALLGGIVSQTFHAFKTDFNEPSKPFKQVVSKMIAAGRRKQEARETCQKGYHVGCMPIRLLSLPYFVAFSTARFHMLRSIEQAAKNQVTALPLLVLGLVVAASVAAYAVRHINVKNSKSVASVDKLTENGEEKEEIKHYVEEEEEEEVKLISSVFDQVPVYITEDEDILPEFEELLSGEIEFPLPEIDDDKAEKDRVYETEMANNASELEQLRNLVQELEEREVKLEGELLEYYGLKEQESDITELQRQLKIKAVEIDMLNITISSLQAERKKLQEEIAQDGMVKKELAFARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEMETRRKDDEMEKKLKAVKDLEVEVMELKRMNKELQIEKRELTIKLDAAENSISTLSNMTESELVSQTREEVNSLRHANEDLIKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPTGKLSARDLNKNLSPKSQEKAKQLMLEYAGSERGQGDTDLESNFSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSALSSPARSFSGSSPSRMSMSQKPRGPLEALMLRNASDNVAITTFGMMEHEIPDSPSTPNLPTIRTQTPNESLNSVASSFQLMSKSVEGVLDEKYPAYKDRHKLALAREKQIKERADQARAERFGNISNSNLNTEFKGKTDKDRYATLPPKLSQIKEKPVVPSASADPSGEDKTTESPAISRMKLAEIEKRPPRTPKPPPKPSAGASVSKGPNPQGGVPAAPPLPPPPPPPGGPPRPPPPPGSLAKGVGGDKVHRAPELVEFYQTLMKREAKKDTPLLSSTTSNVSDARSNMIGEIENRSSFLIAVKADVETQGDFVMSLAAEVRGATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASFEYQDLMKLEKRVTTFVDEPKLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLSDTGVVGKV 1795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8736623 8750498 - CmaCh18G010500.1 Cma18g01050 314388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01050 1795 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cma18g01050 1795 CDD LSm14_N 16 87 IPR025609 -
Cma18g01050 1795 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cma18g01050 1795 Pfam Eukaryotic cytochrome b561 656 786 IPR006593 -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 1563 1591 - -
Cma18g01050 1795 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 906 1795 IPR040265 -
Cma18g01050 1795 ProSiteProfiles DFDF domain profile. 421 457 IPR025762 -
Cma18g01050 1795 Gene3D - 7 92 - -
Cma18g01050 1795 ProSiteProfiles FFD box profile. 488 503 IPR025761 -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 1337 1372 - -
Cma18g01050 1795 Gene3D - 606 827 - -
Cma18g01050 1795 SMART FDF_2 427 531 IPR019050 -
Cma18g01050 1795 SMART 561_7 656 781 IPR006593 -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 1288 1314 - -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 451 466 - -
Cma18g01050 1795 CDD Cyt_b561_ACYB-1_like 650 789 - -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 1466 1597 - -
Cma18g01050 1795 Coils Coil 1098 1118 - -
Cma18g01050 1795 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 906 1795 - -
Cma18g01050 1795 Coils Coil 1147 1195 - -
Cma18g01050 1795 Pfam FDF domain 427 529 IPR019050 -
Cma18g01050 1795 Coils Coil 1201 1228 - -
Cma18g01050 1795 Coils Coil 1012 1042 - -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 451 481 - -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 1345 1368 - -
Cma18g01050 1795 ProSiteProfiles Cytochrome b561 domain profile. 618 823 IPR006593 -
Cma18g01050 1795 Coils Coil 1046 1087 - -
Cma18g01050 1795 MobiDBLite consensus disorder prediction 1292 1314 - -
Cma18g01050 1795 SMART LSM14_2 10 110 IPR025609 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01418 Cma18g01050 CCT
Cma15g01418 Cma18g01050 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01543 Cma-Chr4:7822563 Cma18g01050 Cma-Chr18:8736623 0 dispersed
Cma04g01995 Cma-Chr4:11985199 Cma18g01050 Cma-Chr18:8736623 1.28E-170 dispersed
Cma15g01418 Cma-Chr15:8956482 Cma18g01050 Cma-Chr18:8736623 2.95E-85 dispersed
Cma15g01419 Cma-Chr15:8960673 Cma18g01050 Cma-Chr18:8736623 2.60E-173 dispersed
Cma19g00416 Cma-Chr19:5015093 Cma18g01050 Cma-Chr18:8736623 5.89E-40 dispersed
Cma01g01357 Cma-Chr1:9668432 Cma18g01050 Cma-Chr18:8736623 1.38E-13 transposed
Cma08g00748 Cma-Chr8:4497509 Cma18g01050 Cma-Chr18:8736623 7.40E-60 transposed
Cma15g00193 Cma-Chr15:931475 Cma18g01050 Cma-Chr18:8736623 5.16E-55 wgd
Cma18g01050 Cma-Chr18:8736623 Cma04g01541 Cma-Chr4:7809860 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01050 - - csv:101205484 1380.16