Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01052 ATGGCTTTTGCTGATATCTTTGTTTTCCGTTCTGTTCTTGCTCTTGGTTGTGTTATGGAGAAGAAGAGATTCTTGGTGTTTGTATTGTTTGTGTGTTTGGGGAGTTGGAGTTATGCTCAAGAAGGTGGAGAAGCTGCTCCAATGGAGAAAACAGAGCTTGATGCTCTGTTCTCTGCAATTCAGGGCTTTGTGGGGAATTCATGGAATGGCTCAGATCTTTACCCAGATCCTTGTGGTTGGACTCCAATACAGGGGGTTTCTTGTGATATCTTTGATGGGCTCTGGTATGTCACTGCACTAAGCATTGGACCAACTCATGAGAACTCGCTTGCTTGTGCTCCAAATGCCCATTTCAGACAGCAATTGTTTGAACTCAAACACCTTAAAACTTTGTCATTCTTCAGCTGCTTTGTGTCGGCTACAAGGATCAATTCTGTTTCACTCCCAGCCGGAGAATGGCTGAATCTCGCCGGAAGTTTAGAATCTCTTGAGTTCAGATCAAACGCTGGCCTCACCGGAAAAATTCCGGCCAGTTTAGGGAGTCTTTCAAACCTACAATCTTTGATTCTATTACAGAATGGATTGGTGGGCGAAATACCAGAATCTTTTGGCAATTTGATCCGATTGAAACGGCTGGTTCTTTCTGGGAACTCGCTCACTGGTCCAATTGCTCCAAATCTCGGCAGGTTGAGCGAGCTGCTGATTTTGGATTTGAGTAGAAATTTTCTGTCGGGTTCTTTGCCGCCATGTTTGGGGAATTTAAGCTCCCTTTTGAAGCTTGATCTGAGTGACAACAAATTGGGTGGAGTTTTGCCGGATGAAATCGGTGATATGAGGAGCTTAACTCTTCTGGATCTCAGCAACAACAGTTTCTACGGCGGATTGAGAAGGCCGTTTGAGAAGATGAATTCGTTGGAAGAAATCATCTTATCCAACAACCCGATCGGCGGAGAACTCAAGAACATAAACTGGAAAAGTCTAAGAAATTTGATGATTTTGGATCTCTCCGACATGGGTTTGACAGGGGACATTCCCGATTCACTGTCGGAATTAAAGAAACTAAGGTTTCTGGGACTAAGCCGCAACAATCTAACCGGAAACCCTTCGCCGGAACTTGCAGCTCTGCCATTCGTTAGTGCAATTTACCTGTTCGGGAACAATTTATCCGGTGACCTTAAATTCTCCGAAGAGTTTTATGGGAACATGGGAAGGAGATTCGGGGCCTGGGATAATCCGAATCTGTGTTACCCCATGGGAATGGTGACGGCTAACAGTGCTCCATATGGAGTGAAGCCATGTGAGGAGGAGGAGGAGGAAGAAGAAGTGATCAAATTGACGGAAAAACCCTTCTCAAATGGGAATGTGGCTGTCTCGAACGGGTGTTCTTGGGTTGGAGTTGAAGGGTTTTGGTGGAAATTTGTGGGGAAGACATTAACGATGATTTTGCTAATCATGAGGTTGTGA 1464 44.95 MAFADIFVFRSVLALGCVMEKKRFLVFVLFVCLGSWSYAQEGGEAAPMEKTELDALFSAIQGFVGNSWNGSDLYPDPCGWTPIQGVSCDIFDGLWYVTALSIGPTHENSLACAPNAHFRQQLFELKHLKTLSFFSCFVSATRINSVSLPAGEWLNLAGSLESLEFRSNAGLTGKIPASLGSLSNLQSLILLQNGLVGEIPESFGNLIRLKRLVLSGNSLTGPIAPNLGRLSELLILDLSRNFLSGSLPPCLGNLSSLLKLDLSDNKLGGVLPDEIGDMRSLTLLDLSNNSFYGGLRRPFEKMNSLEEIILSNNPIGGELKNINWKSLRNLMILDLSDMGLTGDIPDSLSELKKLRFLGLSRNNLTGNPSPELAALPFVSAIYLFGNNLSGDLKFSEEFYGNMGRRFGAWDNPNLCYPMGMVTANSAPYGVKPCEEEEEEEEVIKLTEKPFSNGNVAVSNGCSWVGVEGFWWKFVGKTLTMILLIMRL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8756452 8758281 + CmaCh18G010520.1 Cma18g01052 314390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01052 487 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 19 484 - -
Cma18g01052 487 PANTHER PIRIFORMOSPORA INDICA-INSENSITIVE PROTEIN 2-LIKE 19 484 - -
Cma18g01052 487 Gene3D Ribonuclease Inhibitor 324 418 IPR032675 -
Cma18g01052 487 SUPERFAMILY L domain-like 55 393 - -
Cma18g01052 487 Gene3D Ribonuclease Inhibitor 218 323 IPR032675 -
Cma18g01052 487 Pfam Leucine rich repeat 233 290 IPR001611 GO:0005515
Cma18g01052 487 Gene3D Ribonuclease Inhibitor 50 217 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01052 - - - cmos:111458791 734.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01052 Cma-Chr18:8756452 Cma20g00245 Cma-Chr20:1195883 3.65E-53 dispersed
Cma18g01052 Cma-Chr18:8756452 Cma04g01545 Cma-Chr4:7829893 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g245 . . . . . . Bma14g01692 . Cmo04g01616 Cmo18g01074 . Cma18g01052 Car04g01594 Car18g00977 Sed08g2668 Cpe09g00266 Cpe01g01372 Bhi07g01382 Tan04g0911 Cmetu12g0289 Lac13g0447 Hepe10g1861 . . Cla05g02338 Cam05g2512 Cec05g2537 Cco05g2579 Clacu05g2506 Cmu05g2368 Cre05g2485 Cone13ag0865 Cone19ag0865 . . Lsi04g00299 Csa05g02568 Chy10g01107 Cme10g00302 . . Bda07g01522 . Bpe11g01684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008678 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01052 Cma_Chr18 FPKM 0.309373 0.172595 0.209604 0.249084 29.907047 23.423555 32.98613 0.0 0.067576 0.0