Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01053 ATGTCCAACTCCCTCCATGATTCCTCCTCCTCCTCCTTCTCCCGCCGGTATTTCACCTGGAAAAACAAGCCCCAAGAAGAACAACACCAAGAACCCTTGTCCTTCACTTTGTCCTCCCGTTTCAGCGAAGAAGACAAGCAAGACAACCTCAAGAAACCAGAGAAGAAGAAACCATCTGCTTCTAAGCTCCGGACGGCTTTAACAGCCATCGGACGGATCCGGCCGACAACCAACCGCTCCCGGCTTGGCGGCCGGGTTGTCGGTACGCTATTTGGGTACCGGCGAGGACATGTCTATTTCGCGTTACAAGAAGACCCAAAACAGAATCCGACGTTTTTAATTGAGCTATCGACGCCGACGAGTGTTCTGGTGCGGGAAATGGCATCTGGGTTGGTTCGAATCGCGCTGGAATGTGAGAGGAAAGCAGAGAGGAAGAAGAATTGTAAGTTAGTAGAGGAGGCGCTATGGAGAACGTATTGTAATGGGAAGAAATGTGGGTATGCGAGTAGAAGGGAGTGTGGGACGGAGGAGCAGAGGATTCTGAAGGCGGTGGAGCCGATCACGATGGGGGCGGGGGTATTGCCGGCGGCGGAGGGAAGTGGAAATGGGTCGGAGGGGGAATTGATGTACATGAGGGCCAGGTTTGAGCGGGTGATCGGGTCGAAGGATTCGGAAGCTTTTTACATGATGAGCCCTGATTGTAATGGAGGGCCTGAACTTAGTATTTACTTGCTTAGGATTTGA 744 52.28 MSNSLHDSSSSSFSRRYFTWKNKPQEEQHQEPLSFTLSSRFSEEDKQDNLKKPEKKKPSASKLRTALTAIGRIRPTTNRSRLGGRVVGTLFGYRRGHVYFALQEDPKQNPTFLIELSTPTSVLVREMASGLVRIALECERKAERKKNCKLVEEALWRTYCNGKKCGYASRRECGTEEQRILKAVEPITMGAGVLPAAEGSGNGSEGELMYMRARFERVIGSKDSEAFYMMSPDCNGGPELSIYLLRI 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8764167 8764910 - CmaCh18G010530.1 Cma18g01053 314391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01053 247 PANTHER PROTEIN MIZU-KUSSEI 1 3 247 IPR006460 GO:0010274
Cma18g01053 247 PANTHER OS01G0642600 PROTEIN 3 247 - -
Cma18g01053 247 Pfam Protein of unknown function, DUF617 86 246 IPR006460 GO:0010274
Cma18g01053 247 MobiDBLite consensus disorder prediction 41 61 - -
Cma18g01053 247 MobiDBLite consensus disorder prediction 22 63 - -
Cma18g01053 247 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 86 247 IPR006460 GO:0010274
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01053 - - - cpep:111801846 448.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00401 Cma-Chr3:4430071 Cma18g01053 Cma-Chr18:8764167 3.94E-46 dispersed
Cma07g01330 Cma-Chr7:7547846 Cma18g01053 Cma-Chr18:8764167 2.62E-65 dispersed
Cma18g00028 Cma-Chr18:108496 Cma18g01053 Cma-Chr18:8764167 1.72E-87 dispersed
Cma18g01053 Cma-Chr18:8764167 Cma20g01119 Cma-Chr20:8826571 1.02E-57 dispersed
Cma10g00259 Cma-Chr10:1154937 Cma18g01053 Cma-Chr18:8764167 9.05E-89 wgd
Cma11g00250 Cma-Chr11:1267476 Cma18g01053 Cma-Chr18:8764167 2.34E-88 wgd
Cma13g01048 Cma-Chr13:7981602 Cma18g01053 Cma-Chr18:8764167 1.60E-83 wgd
Cma18g01053 Cma-Chr18:8764167 Cma04g01546 Cma-Chr4:7838834 1.01E-117 wgd
Cma18g01053 Cma-Chr18:8764167 Cma04g01998 Cma-Chr4:12067628 6.17E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g244 . Blo16g01046 . Bda11g01125 Bpe13g01322 . Bma14g01690 . Cmo04g01617 Cmo18g01075 . Cma18g01053 Car04g01596 . Sed14g0510 Cpe09g00264 Cpe01g01753 Bhi07g01383 Tan04g0913 Cmetu10g1393 Lac13g0446 Hepe10g1858 . . Cla05g02341 Cam05g2514 Cec05g2540 Cco05g2581 Clacu05g2508 Cmu05g2370 Cre05g2487 Cone13ag0866 Cone19ag0866 Cone6ag0479 Cone9ag0491 Lsi04g00301 Csa05g02071 Chy10g01106 Cme10g00304 . Blo11g00825 Bda07g01520 Bda11g01125 Bpe11g01682 . . Bma06g00777 . . . . . . . . . Bhi12g00826 . . . . . . Cla01g00565 Cam01g0588 Cec01g0580 Cco01g0604 Clacu01g0583 Cmu01g0554 Cre09g1953 Lsi09g00613 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000518 5 3 5 6 5 3 4 3 3 3 3 3 6 3 3 6 3 4 6 2 3 3 3 4 3 3 3 6 3 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01053 Cma_Chr18 FPKM 4.27957 2.633946 0.847274 1.377104 3.8744 2.547759 2.464285 0.095978 0.0 0.084701